Cluster: HRGMv2_4240_CGC18
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4240
- CGC Family ID: CGCFAM_02161
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4240_110 | HRGMv2_4240_110_3 | 1079 | 1588 | - | 1.A.54.5.1 |
| pfam | HRGMv2_4240_110 | HRGMv2_4240_110_4 | 1953 | 2924 | - | AP_endonuc_2 |
| pfam | HRGMv2_4240_110 | HRGMv2_4240_110_5 | 2946 | 3893 | - | AP_endonuc_2 |
| TC | HRGMv2_4240_110 | HRGMv2_4240_110_6 | 3909 | 4739 | - | 3.A.1.1.41 |
| TC | HRGMv2_4240_110 | HRGMv2_4240_110_7 | 4736 | 5632 | - | 3.A.1.1.7 |
| STP | HRGMv2_4240_110 | HRGMv2_4240_110_8 | 5656 | 6921 | - | SBP_bac_1 |
| CAZyme | HRGMv2_4240_110 | HRGMv2_4240_110_9 | 6934 | 8070 | - | GH109 |
Gene ID: HRGMv2_4240_110_3
Type: TC
Location: 1079 - 1588 (-)
Type: TC
Location: 1079 - 1588 (-)
Gene ID: HRGMv2_4240_110_4
Type: pfam
Location: 1953 - 2924 (-)
Type: pfam
Location: 1953 - 2924 (-)
Gene ID: HRGMv2_4240_110_5
Type: pfam
Location: 2946 - 3893 (-)
Type: pfam
Location: 2946 - 3893 (-)
Gene ID: HRGMv2_4240_110_6
Type: TC
Location: 3909 - 4739 (-)
Type: TC
Location: 3909 - 4739 (-)
Gene ID: HRGMv2_4240_110_7
Type: TC
Location: 4736 - 5632 (-)
Type: TC
Location: 4736 - 5632 (-)
Gene ID: HRGMv2_4240_110_8
Type: STP
Location: 5656 - 6921 (-)
Type: STP
Location: 5656 - 6921 (-)
Gene ID: HRGMv2_4240_110_9
Type: CAZyme
Location: 6934 - 8070 (-)
Type: CAZyme
Location: 6934 - 8070 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Merdiplasma
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.