Cluster: HRGMv2_4240_CGC16
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4240
- CGC Family ID: CGCFAM_00460
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4240_96 | HRGMv2_4240_96_1 | 1 | 729 | + | 2.A.1.24.4 |
| CAZyme | HRGMv2_4240_96 | HRGMv2_4240_96_2 | 775 | 2919 | + | GH36 |
| TC | HRGMv2_4240_96 | HRGMv2_4240_96_3 | 3030 | 5633 | + | 3.A.9.1.2 |
| pfam | HRGMv2_4240_96 | HRGMv2_4240_96_4 | 5660 | 5833 | + | DUF4250 |
| TC | HRGMv2_4240_96 | HRGMv2_4240_96_5 | 5871 | 7232 | - | 2.A.66.1.32 |
| NULL(UNKNOWN) | HRGMv2_4240_96 | HRGMv2_4240_96_6 | 7358 | 7885 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4240_96 | HRGMv2_4240_96_7 | 7941 | 8774 | + | CE4 |
Gene ID: HRGMv2_4240_96_1
Type: TC
Location: 1 - 729 (+)
Type: TC
Location: 1 - 729 (+)
Gene ID: HRGMv2_4240_96_2
Type: CAZyme
Location: 775 - 2919 (+)
Type: CAZyme
Location: 775 - 2919 (+)
Gene ID: HRGMv2_4240_96_3
Type: TC
Location: 3030 - 5633 (+)
Type: TC
Location: 3030 - 5633 (+)
Gene ID: HRGMv2_4240_96_4
Type: pfam
Location: 5660 - 5833 (+)
Type: pfam
Location: 5660 - 5833 (+)
Gene ID: HRGMv2_4240_96_5
Type: TC
Location: 5871 - 7232 (-)
Type: TC
Location: 5871 - 7232 (-)
Gene ID: HRGMv2_4240_96_6
Type:
Location: 7358 - 7885 (+)
Type:
Location: 7358 - 7885 (+)
Gene ID: HRGMv2_4240_96_7
Type: CAZyme
Location: 7941 - 8774 (+)
Type: CAZyme
Location: 7941 - 8774 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Merdiplasma
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.