Cluster: HRGMv2_4240_CGC3
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4240
- CGC Family ID: CGCFAM_00258
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4240_12 | HRGMv2_4240_12_2 | 2463 | 3365 | - | GT2 |
| TC | HRGMv2_4240_12 | HRGMv2_4240_12_3 | 3669 | 4067 | - | 3.A.2.1.1 |
| TC | HRGMv2_4240_12 | HRGMv2_4240_12_4 | 4080 | 5474 | - | 3.A.2.1.5 |
| TC | HRGMv2_4240_12 | HRGMv2_4240_12_5 | 5537 | 6394 | - | 3.A.2.1.5 |
| TC | HRGMv2_4240_12 | HRGMv2_4240_12_6 | 6415 | 7944 | - | 3.A.2.1.5 |
| pfam | HRGMv2_4240_12 | HRGMv2_4240_12_7 | 7961 | 8500 | - | OSCP |
| pfam | HRGMv2_4240_12 | HRGMv2_4240_12_8 | 8497 | 9000 | - | ATP-synt_B |
| TC | HRGMv2_4240_12 | HRGMv2_4240_12_9 | 9101 | 9379 | - | 3.A.2.1.2 |
| TC | HRGMv2_4240_12 | HRGMv2_4240_12_10 | 9436 | 10194 | - | 3.A.2.1.5 |
| NULL(UNKNOWN) | HRGMv2_4240_12 | HRGMv2_4240_12_11 | 10282 | 10689 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_4240_12 | HRGMv2_4240_12_12 | 10752 | 11021 | - | ATPase_gene1 |
| TC | HRGMv2_4240_12 | HRGMv2_4240_12_13 | 11228 | 14626 | - | 9.B.74.1.4 |
| pfam | HRGMv2_4240_12 | HRGMv2_4240_12_14 | 14661 | 16739 | - | MMPL | MMPL |
| STP | HRGMv2_4240_12 | HRGMv2_4240_12_15 | 16890 | 17450 | - | TetR_N |
| TC | HRGMv2_4240_12 | HRGMv2_4240_12_16 | 17522 | 18568 | - | 2.A.86.1.9 |
Gene ID: HRGMv2_4240_12_2
Type: CAZyme
Location: 2463 - 3365 (-)
Type: CAZyme
Location: 2463 - 3365 (-)
Gene ID: HRGMv2_4240_12_3
Type: TC
Location: 3669 - 4067 (-)
Type: TC
Location: 3669 - 4067 (-)
Gene ID: HRGMv2_4240_12_4
Type: TC
Location: 4080 - 5474 (-)
Type: TC
Location: 4080 - 5474 (-)
Gene ID: HRGMv2_4240_12_5
Type: TC
Location: 5537 - 6394 (-)
Type: TC
Location: 5537 - 6394 (-)
Gene ID: HRGMv2_4240_12_6
Type: TC
Location: 6415 - 7944 (-)
Type: TC
Location: 6415 - 7944 (-)
Gene ID: HRGMv2_4240_12_7
Type: pfam
Location: 7961 - 8500 (-)
Type: pfam
Location: 7961 - 8500 (-)
Gene ID: HRGMv2_4240_12_8
Type: pfam
Location: 8497 - 9000 (-)
Type: pfam
Location: 8497 - 9000 (-)
Gene ID: HRGMv2_4240_12_9
Type: TC
Location: 9101 - 9379 (-)
Type: TC
Location: 9101 - 9379 (-)
Gene ID: HRGMv2_4240_12_10
Type: TC
Location: 9436 - 10194 (-)
Type: TC
Location: 9436 - 10194 (-)
Gene ID: HRGMv2_4240_12_11
Type:
Location: 10282 - 10689 (-)
Type:
Location: 10282 - 10689 (-)
Gene ID: HRGMv2_4240_12_12
Type: pfam
Location: 10752 - 11021 (-)
Type: pfam
Location: 10752 - 11021 (-)
Gene ID: HRGMv2_4240_12_13
Type: TC
Location: 11228 - 14626 (-)
Type: TC
Location: 11228 - 14626 (-)
Gene ID: HRGMv2_4240_12_14
Type: pfam
Location: 14661 - 16739 (-)
Type: pfam
Location: 14661 - 16739 (-)
Gene ID: HRGMv2_4240_12_15
Type: STP
Location: 16890 - 17450 (-)
Type: STP
Location: 16890 - 17450 (-)
Gene ID: HRGMv2_4240_12_16
Type: TC
Location: 17522 - 18568 (-)
Type: TC
Location: 17522 - 18568 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Merdiplasma
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.