Cluster: HRGMv2_4240_CGC24
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate: alpha-glucan
- Genome ID: HRGMv2_4240
- CGC Family ID: CGCFAM_00010
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4240_249 | HRGMv2_4240_249_1 | 1 | 789 | + | 3.A.1.1.45 |
| CAZyme | HRGMv2_4240_249 | HRGMv2_4240_249_2 | 826 | 2310 | + | GH77 |
| TF | HRGMv2_4240_249 | HRGMv2_4240_249_3 | 2380 | 3411 | + | LacI |
| TC | HRGMv2_4240_249 | HRGMv2_4240_249_4 | 3415 | 3603 | + | 3.A.1.33.1 |
Gene ID: HRGMv2_4240_249_1
Type: TC
Location: 1 - 789 (+)
Type: TC
Location: 1 - 789 (+)
Gene ID: HRGMv2_4240_249_2
Type: CAZyme
Location: 826 - 2310 (+)
Type: CAZyme
Location: 826 - 2310 (+)
Gene ID: HRGMv2_4240_249_3
Type: TF
Location: 2380 - 3411 (+)
Type: TF
Location: 2380 - 3411 (+)
Gene ID: HRGMv2_4240_249_4
Type: TC
Location: 3415 - 3603 (+)
Type: TC
Location: 3415 - 3603 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Merdiplasma
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.