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Genome Details

Selected Rep_genome_ID: HRGMv2_3870
Total Genomes Found: 1
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→
Genomes Table
Genome ID Genome Length Completeness Contamination Country Continent Source
HRGMv2_3870 3,891,393 96.64% 0.279% UK Europe HRGM
Analysis Charts
CGCs
Gene Cluster ID Family Name In Labeled Family Gene Count CAZyme Count Substrate
HRGMv2_3870_CGC53 CGCFAM_00001 Yes 4 1 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
HRGMv2_3870_CGC54 CGCFAM_00001 Yes 4 1 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
HRGMv2_3870_CGC11 CGCFAM_00017 Yes 9 4 fructan
HRGMv2_3870_CGC61 CGCFAM_00082 Yes 6 3 beta-mannan
HRGMv2_3870_CGC4 CGCFAM_00101 Yes 12 7 beta-glucan
HRGMv2_3870_CGC36 CGCFAM_00164 Yes 7 3
HRGMv2_3870_CGC41 CGCFAM_00225 Yes 7 3 arabinogalactan
HRGMv2_3870_CGC49 CGCFAM_00229 Yes 7 1
HRGMv2_3870_CGC24 CGCFAM_00273 Yes 29 16 xylan
HRGMv2_3870_CGC18 CGCFAM_00372 Yes 6 2
HRGMv2_3870_CGC55 CGCFAM_00633 Yes 9 1
HRGMv2_3870_CGC47 CGCFAM_00997 Yes 3 2
HRGMv2_3870_CGC3 CGCFAM_01077 Yes 7 4
HRGMv2_3870_CGC15 CGCFAM_01308 Yes 8 1
HRGMv2_3870_CGC7 CGCFAM_01491 Yes 16 7
HRGMv2_3870_CGC45 CGCFAM_01658 Yes 7 2
HRGMv2_3870_CGC22 CGCFAM_01743 Yes 13 4
HRGMv2_3870_CGC35 CGCFAM_01788 Yes 4 1
HRGMv2_3870_CGC57 CGCFAM_01797 Yes 5 1
HRGMv2_3870_CGC23 CGCFAM_01826 Yes 6 3
HRGMv2_3870_CGC9 CGCFAM_02214 Yes 4 1
HRGMv2_3870_CGC2 CGCFAM_02840 Yes 3 1
HRGMv2_3870_CGC20 CGCFAM_02862 Yes 8 2
HRGMv2_3870_CGC25 CGCFAM_02863 Yes 8 1
HRGMv2_3870_CGC13 CGCFAM_02864 Yes 10 2
Top CAZyme Families