Cluster: HRGMv2_3870_CGC49
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3870
- CGC Family ID: CGCFAM_00229
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3870_29 | HRGMv2_3870_29_54 | 51168 | 52073 | + | 2.A.7.3.57 |
| NULL(UNKNOWN) | HRGMv2_3870_29 | HRGMv2_3870_29_55 | 52065 | 52307 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_3870_29 | HRGMv2_3870_29_56 | 52354 | 53367 | - | ApbE |
| TC | HRGMv2_3870_29 | HRGMv2_3870_29_57 | 53371 | 53943 | - | 2.A.107.1.2 |
| pfam | HRGMv2_3870_29 | HRGMv2_3870_29_58 | 53949 | 54650 | - | DUF6048 |
| pfam | HRGMv2_3870_29 | HRGMv2_3870_29_59 | 54643 | 55146 | - | DUF6452 |
| CAZyme | HRGMv2_3870_29 | HRGMv2_3870_29_60 | 55146 | 56096 | - | GT2 |
Gene ID: HRGMv2_3870_29_54
Type: TC
Location: 51168 - 52073 (+)
Type: TC
Location: 51168 - 52073 (+)
Gene ID: HRGMv2_3870_29_55
Type:
Location: 52065 - 52307 (-)
Type:
Location: 52065 - 52307 (-)
Gene ID: HRGMv2_3870_29_56
Type: pfam
Location: 52354 - 53367 (-)
Type: pfam
Location: 52354 - 53367 (-)
Gene ID: HRGMv2_3870_29_57
Type: TC
Location: 53371 - 53943 (-)
Type: TC
Location: 53371 - 53943 (-)
Gene ID: HRGMv2_3870_29_58
Type: pfam
Location: 53949 - 54650 (-)
Type: pfam
Location: 53949 - 54650 (-)
Gene ID: HRGMv2_3870_29_59
Type: pfam
Location: 54643 - 55146 (-)
Type: pfam
Location: 54643 - 55146 (-)
Gene ID: HRGMv2_3870_29_60
Type: CAZyme
Location: 55146 - 56096 (-)
Type: CAZyme
Location: 55146 - 56096 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3870_29_59 | vegetarian > vegan | 1.22564 | 0.04511 |