Cluster: HRGMv2_3870_CGC4
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 7
- Substrate: beta-glucan
- Genome ID: HRGMv2_3870
- CGC Family ID: CGCFAM_00101
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3870_2 | HRGMv2_3870_2_49 | 68401 | 71298 | - | CBM91 | GH43_12 | GH43_16 |
| CAZyme | HRGMv2_3870_2 | HRGMv2_3870_2_50 | 71409 | 72860 | - | GH5_4 |
| pfam | HRGMv2_3870_2 | HRGMv2_3870_2_51 | 72880 | 74388 | - | SGBP_B_XBD |
| pfam | HRGMv2_3870_2 | HRGMv2_3870_2_52 | 74402 | 76051 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_3870_2 | HRGMv2_3870_2_53 | 76074 | 79256 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_3870_2 | HRGMv2_3870_2_54 | 79663 | 81807 | - | CBM91 | GH43_10 |
| CAZyme | HRGMv2_3870_2 | HRGMv2_3870_2_55 | 82063 | 84417 | - | GH3 |
| CAZyme | HRGMv2_3870_2 | HRGMv2_3870_2_56 | 85162 | 87771 | + | GH43_16 |
| pfam | HRGMv2_3870_2 | HRGMv2_3870_2_57 | 87823 | 89814 | + | Mfa_like_1 |
| TF | HRGMv2_3870_2 | HRGMv2_3870_2_58 | 89980 | 93951 | + | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_3870_2 | HRGMv2_3870_2_59 | 94095 | 96974 | + | GH31_4 |
| CAZyme | HRGMv2_3870_2 | HRGMv2_3870_2_60 | 97212 | 99716 | + | GH2 |
Gene ID: HRGMv2_3870_2_49
Type: CAZyme
Location: 68401 - 71298 (-)
Type: CAZyme
Location: 68401 - 71298 (-)
Gene ID: HRGMv2_3870_2_50
Type: CAZyme
Location: 71409 - 72860 (-)
Type: CAZyme
Location: 71409 - 72860 (-)
Gene ID: HRGMv2_3870_2_51
Type: pfam
Location: 72880 - 74388 (-)
Type: pfam
Location: 72880 - 74388 (-)
Gene ID: HRGMv2_3870_2_52
Type: pfam
Location: 74402 - 76051 (-)
Type: pfam
Location: 74402 - 76051 (-)
Gene ID: HRGMv2_3870_2_53
Type: TC
Location: 76074 - 79256 (-)
Type: TC
Location: 76074 - 79256 (-)
Gene ID: HRGMv2_3870_2_54
Type: CAZyme
Location: 79663 - 81807 (-)
Type: CAZyme
Location: 79663 - 81807 (-)
Gene ID: HRGMv2_3870_2_55
Type: CAZyme
Location: 82063 - 84417 (-)
Type: CAZyme
Location: 82063 - 84417 (-)
Gene ID: HRGMv2_3870_2_56
Type: CAZyme
Location: 85162 - 87771 (+)
Type: CAZyme
Location: 85162 - 87771 (+)
Gene ID: HRGMv2_3870_2_57
Type: pfam
Location: 87823 - 89814 (+)
Type: pfam
Location: 87823 - 89814 (+)
Gene ID: HRGMv2_3870_2_58
Type: TF
Location: 89980 - 93951 (+)
Type: TF
Location: 89980 - 93951 (+)
Gene ID: HRGMv2_3870_2_59
Type: CAZyme
Location: 94095 - 96974 (+)
Type: CAZyme
Location: 94095 - 96974 (+)
Gene ID: HRGMv2_3870_2_60
Type: CAZyme
Location: 97212 - 99716 (+)
Type: CAZyme
Location: 97212 - 99716 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.