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Cluster: HRGMv2_3870_CGC36

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3870_16 HRGMv2_3870_16_49 52823 55390 - GH2
pfam HRGMv2_3870_16 HRGMv2_3870_16_50 55404 58238 + tRNA-synt_1 | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1_2
TC HRGMv2_3870_16 HRGMv2_3870_16_51 58311 59207 + 2.A.115.1.2
CAZyme HRGMv2_3870_16 HRGMv2_3870_16_52 59317 61908 + GH2
CAZyme HRGMv2_3870_16 HRGMv2_3870_16_53 61952 64261 + GH20
sulfatase HRGMv2_3870_16 HRGMv2_3870_16_54 64406 64993 + S1_7
TC HRGMv2_3870_16 HRGMv2_3870_16_55 65168 68245 + 1.B.14.6.1
Gene ID: HRGMv2_3870_16_49
Type: CAZyme
Location: 52823 - 55390 (-)
Gene ID: HRGMv2_3870_16_50
Type: pfam
Location: 55404 - 58238 (+)
Gene ID: HRGMv2_3870_16_51
Type: TC
Location: 58311 - 59207 (+)
Gene ID: HRGMv2_3870_16_52
Type: CAZyme
Location: 59317 - 61908 (+)
Gene ID: HRGMv2_3870_16_53
Type: CAZyme
Location: 61952 - 64261 (+)
Gene ID: HRGMv2_3870_16_54
Type: sulfatase
Location: 64406 - 64993 (+)
Gene ID: HRGMv2_3870_16_55
Type: TC
Location: 65168 - 68245 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3870_16_54 vegetarian > vegan 1.32885 0.04511
HRGMv2_3870_16_55 vegetarian > vegan 1.04267 0.04511

🧭 Explore Read Mapping of CGC

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