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Cluster: HRGMv2_3870_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3870_4 HRGMv2_3870_4_27 32575 33972 - GH28
CAZyme HRGMv2_3870_4 HRGMv2_3870_4_28 34207 36702 - CBM91 | GH43_19 | GH43_9
TF HRGMv2_3870_4 HRGMv2_3870_4_29 36960 40973 - HTH_AraC | HTH_AraC
pfam HRGMv2_3870_4 HRGMv2_3870_4_30 41126 42277 - Cyt_bd_oxida_II
TC HRGMv2_3870_4 HRGMv2_3870_4_31 42312 43808 - 3.D.4.3.2
pfam HRGMv2_3870_4 HRGMv2_3870_4_32 43858 44076 - DUF4492
TC HRGMv2_3870_4 HRGMv2_3870_4_33 44219 45562 + 3.A.1.109.5
pfam HRGMv2_3870_4 HRGMv2_3870_4_34 45575 46798 + HlyD_3 | Biotin_lipoyl_2 | HlyD_D23
TC HRGMv2_3870_4 HRGMv2_3870_4_35 46811 47557 + 3.A.1.122.2
TC HRGMv2_3870_4 HRGMv2_3870_4_36 47577 48797 + 3.A.1.122.1
Gene ID: HRGMv2_3870_4_27
Type: CAZyme
Location: 32575 - 33972 (-)
Gene ID: HRGMv2_3870_4_28
Type: CAZyme
Location: 34207 - 36702 (-)
Gene ID: HRGMv2_3870_4_29
Type: TF
Location: 36960 - 40973 (-)
Gene ID: HRGMv2_3870_4_30
Type: pfam
Location: 41126 - 42277 (-)
Gene ID: HRGMv2_3870_4_31
Type: TC
Location: 42312 - 43808 (-)
Gene ID: HRGMv2_3870_4_32
Type: pfam
Location: 43858 - 44076 (-)
Gene ID: HRGMv2_3870_4_33
Type: TC
Location: 44219 - 45562 (+)
Gene ID: HRGMv2_3870_4_34
Type: pfam
Location: 45575 - 46798 (+)
Gene ID: HRGMv2_3870_4_35
Type: TC
Location: 46811 - 47557 (+)
Gene ID: HRGMv2_3870_4_36
Type: TC
Location: 47577 - 48797 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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