Cluster: HRGMv2_3870_CGC7
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_3870
- CGC Family ID: CGCFAM_01491
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3870_2 | HRGMv2_3870_2_105 | 153165 | 155105 | - | GH97 |
| CAZyme | HRGMv2_3870_2 | HRGMv2_3870_2_106 | 155272 | 156279 | - | GH43_5 |
| CAZyme | HRGMv2_3870_2 | HRGMv2_3870_2_107 | 156381 | 158276 | - | GH43_4 |
| pfam | HRGMv2_3870_2 | HRGMv2_3870_2_108 | 158346 | 160079 | - | Big_3 |
| pfam | HRGMv2_3870_2 | HRGMv2_3870_2_109 | 160184 | 161944 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_3870_2 | HRGMv2_3870_2_110 | 161971 | 165165 | - | 1.B.14.6.1 |
| TF | HRGMv2_3870_2 | HRGMv2_3870_2_111 | 165559 | 169758 | - | HTH_AraC |
| CAZyme | HRGMv2_3870_2 | HRGMv2_3870_2_112 | 169998 | 171977 | + | GH51_2 |
| CAZyme | HRGMv2_3870_2 | HRGMv2_3870_2_113 | 172517 | 175864 | - | GH2 |
| CAZyme | HRGMv2_3870_2 | HRGMv2_3870_2_114 | 176036 | 178243 | - | GH92 |
| NULL(UNKNOWN) | HRGMv2_3870_2 | HRGMv2_3870_2_115 | 178480 | 178581 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_3870_2 | HRGMv2_3870_2_116 | 179014 | 180663 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_3870_2 | HRGMv2_3870_2_117 | 180688 | 183828 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_3870_2 | HRGMv2_3870_2_118 | 184135 | 186978 | + | GH3 |
| pfam | HRGMv2_3870_2 | HRGMv2_3870_2_119 | 187165 | 188682 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_3870_2 | HRGMv2_3870_2_120 | 188711 | 191818 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_3870_2_105
Type: CAZyme
Location: 153165 - 155105 (-)
Type: CAZyme
Location: 153165 - 155105 (-)
Gene ID: HRGMv2_3870_2_106
Type: CAZyme
Location: 155272 - 156279 (-)
Type: CAZyme
Location: 155272 - 156279 (-)
Gene ID: HRGMv2_3870_2_107
Type: CAZyme
Location: 156381 - 158276 (-)
Type: CAZyme
Location: 156381 - 158276 (-)
Gene ID: HRGMv2_3870_2_108
Type: pfam
Location: 158346 - 160079 (-)
Type: pfam
Location: 158346 - 160079 (-)
Gene ID: HRGMv2_3870_2_109
Type: pfam
Location: 160184 - 161944 (-)
Type: pfam
Location: 160184 - 161944 (-)
Gene ID: HRGMv2_3870_2_110
Type: TC
Location: 161971 - 165165 (-)
Type: TC
Location: 161971 - 165165 (-)
Gene ID: HRGMv2_3870_2_111
Type: TF
Location: 165559 - 169758 (-)
Type: TF
Location: 165559 - 169758 (-)
Gene ID: HRGMv2_3870_2_112
Type: CAZyme
Location: 169998 - 171977 (+)
Type: CAZyme
Location: 169998 - 171977 (+)
Gene ID: HRGMv2_3870_2_113
Type: CAZyme
Location: 172517 - 175864 (-)
Type: CAZyme
Location: 172517 - 175864 (-)
Gene ID: HRGMv2_3870_2_114
Type: CAZyme
Location: 176036 - 178243 (-)
Type: CAZyme
Location: 176036 - 178243 (-)
Gene ID: HRGMv2_3870_2_115
Type:
Location: 178480 - 178581 (-)
Type:
Location: 178480 - 178581 (-)
Gene ID: HRGMv2_3870_2_116
Type: pfam
Location: 179014 - 180663 (-)
Type: pfam
Location: 179014 - 180663 (-)
Gene ID: HRGMv2_3870_2_117
Type: TC
Location: 180688 - 183828 (-)
Type: TC
Location: 180688 - 183828 (-)
Gene ID: HRGMv2_3870_2_118
Type: CAZyme
Location: 184135 - 186978 (+)
Type: CAZyme
Location: 184135 - 186978 (+)
Gene ID: HRGMv2_3870_2_119
Type: pfam
Location: 187165 - 188682 (-)
Type: pfam
Location: 187165 - 188682 (-)
Gene ID: HRGMv2_3870_2_120
Type: TC
Location: 188711 - 191818 (-)
Type: TC
Location: 188711 - 191818 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3870_2_106 | vegetarian > vegan | 4.36719 | 0.04511 |