Cluster: HRGMv2_3870_CGC24
🧬 Cluster Details
- Gene Count: 29
- CAZyme Count: 16
- Substrate: xylan
- Genome ID: HRGMv2_3870
- CGC Family ID: CGCFAM_00273
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3870_10 | HRGMv2_3870_10_5 | 4809 | 6008 | - | CE1 |
| TC | HRGMv2_3870_10 | HRGMv2_3870_10_6 | 6144 | 8600 | + | 1.B.14.8.2 |
| CAZyme | HRGMv2_3870_10 | HRGMv2_3870_10_7 | 8662 | 11079 | - | GH95 |
| CAZyme | HRGMv2_3870_10 | HRGMv2_3870_10_8 | 11081 | 12721 | - | GH39 |
| NULL(UNKNOWN) | HRGMv2_3870_10 | HRGMv2_3870_10_9 | 12767 | 16255 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3870_10 | HRGMv2_3870_10_10 | 16282 | 17406 | - | GH43_24 |
| pfam | HRGMv2_3870_10 | HRGMv2_3870_10_11 | 17518 | 19506 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_3870_10 | HRGMv2_3870_10_12 | 19534 | 22893 | - | 1.B.14.6.1 |
| TF | HRGMv2_3870_10 | HRGMv2_3870_10_13 | 22934 | 23443 | - | GerE |
| TF | HRGMv2_3870_10 | HRGMv2_3870_10_14 | 23676 | 26483 | - | HTH_AraC |
| CAZyme | HRGMv2_3870_10 | HRGMv2_3870_10_15 | 26751 | 28763 | - | GH67 |
| CAZyme | HRGMv2_3870_10 | HRGMv2_3870_10_16 | 28756 | 29733 | - | GH43_1 |
| CAZyme | HRGMv2_3870_10 | HRGMv2_3870_10_17 | 29782 | 30930 | - | GH10 |
| TC | HRGMv2_3870_10 | HRGMv2_3870_10_18 | 30950 | 32446 | - | 2.A.2.3.4 |
| CAZyme | HRGMv2_3870_10 | HRGMv2_3870_10_19 | 32449 | 34080 | - | CE20 | CE20 |
| TF | HRGMv2_3870_10 | HRGMv2_3870_10_20 | 34345 | 38505 | + | HTH_AraC |
| CAZyme | HRGMv2_3870_10 | HRGMv2_3870_10_21 | 38632 | 39501 | - | CE6 |
| pfam | HRGMv2_3870_10 | HRGMv2_3870_10_22 | 39547 | 39795 | - | DUF5110 |
| pfam | HRGMv2_3870_10 | HRGMv2_3870_10_23 | 39779 | 41257 | - | Glyco_hydro_31_2nd | Gal_mutarotas_2 |
| CAZyme | HRGMv2_3870_10 | HRGMv2_3870_10_24 | 41278 | 42666 | - | CBM6 | GH43_29 |
| CAZyme | HRGMv2_3870_10 | HRGMv2_3870_10_25 | 42694 | 44025 | - | CBM6 | GH43_29 |
| pfam | HRGMv2_3870_10 | HRGMv2_3870_10_26 | 44102 | 44311 | - | Glyco_hydro_43 |
| CAZyme | HRGMv2_3870_10 | HRGMv2_3870_10_27 | 44597 | 46204 | - | CBM91 | GH43_10 |
| CAZyme | HRGMv2_3870_10 | HRGMv2_3870_10_28 | 46239 | 48689 | - | GH95 |
| CAZyme | HRGMv2_3870_10 | HRGMv2_3870_10_29 | 48710 | 49579 | - | CE1 |
| CAZyme | HRGMv2_3870_10 | HRGMv2_3870_10_30 | 49920 | 51632 | + | CBM91 | GH43_12 |
| CAZyme | HRGMv2_3870_10 | HRGMv2_3870_10_31 | 51731 | 54232 | - | GH43_2 | GH8 |
| pfam | HRGMv2_3870_10 | HRGMv2_3870_10_32 | 54320 | 56119 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_3870_10 | HRGMv2_3870_10_33 | 56165 | 59305 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_3870_10_5
Type: CAZyme
Location: 4809 - 6008 (-)
Type: CAZyme
Location: 4809 - 6008 (-)
Gene ID: HRGMv2_3870_10_6
Type: TC
Location: 6144 - 8600 (+)
Type: TC
Location: 6144 - 8600 (+)
Gene ID: HRGMv2_3870_10_7
Type: CAZyme
Location: 8662 - 11079 (-)
Type: CAZyme
Location: 8662 - 11079 (-)
Gene ID: HRGMv2_3870_10_8
Type: CAZyme
Location: 11081 - 12721 (-)
Type: CAZyme
Location: 11081 - 12721 (-)
Gene ID: HRGMv2_3870_10_9
Type:
Location: 12767 - 16255 (-)
Type:
Location: 12767 - 16255 (-)
Gene ID: HRGMv2_3870_10_10
Type: CAZyme
Location: 16282 - 17406 (-)
Type: CAZyme
Location: 16282 - 17406 (-)
Gene ID: HRGMv2_3870_10_11
Type: pfam
Location: 17518 - 19506 (-)
Type: pfam
Location: 17518 - 19506 (-)
Gene ID: HRGMv2_3870_10_12
Type: TC
Location: 19534 - 22893 (-)
Type: TC
Location: 19534 - 22893 (-)
Gene ID: HRGMv2_3870_10_13
Type: TF
Location: 22934 - 23443 (-)
Type: TF
Location: 22934 - 23443 (-)
Gene ID: HRGMv2_3870_10_14
Type: TF
Location: 23676 - 26483 (-)
Type: TF
Location: 23676 - 26483 (-)
Gene ID: HRGMv2_3870_10_15
Type: CAZyme
Location: 26751 - 28763 (-)
Type: CAZyme
Location: 26751 - 28763 (-)
Gene ID: HRGMv2_3870_10_16
Type: CAZyme
Location: 28756 - 29733 (-)
Type: CAZyme
Location: 28756 - 29733 (-)
Gene ID: HRGMv2_3870_10_17
Type: CAZyme
Location: 29782 - 30930 (-)
Type: CAZyme
Location: 29782 - 30930 (-)
Gene ID: HRGMv2_3870_10_18
Type: TC
Location: 30950 - 32446 (-)
Type: TC
Location: 30950 - 32446 (-)
Gene ID: HRGMv2_3870_10_19
Type: CAZyme
Location: 32449 - 34080 (-)
Type: CAZyme
Location: 32449 - 34080 (-)
Gene ID: HRGMv2_3870_10_20
Type: TF
Location: 34345 - 38505 (+)
Type: TF
Location: 34345 - 38505 (+)
Gene ID: HRGMv2_3870_10_21
Type: CAZyme
Location: 38632 - 39501 (-)
Type: CAZyme
Location: 38632 - 39501 (-)
Gene ID: HRGMv2_3870_10_22
Type: pfam
Location: 39547 - 39795 (-)
Type: pfam
Location: 39547 - 39795 (-)
Gene ID: HRGMv2_3870_10_23
Type: pfam
Location: 39779 - 41257 (-)
Type: pfam
Location: 39779 - 41257 (-)
Gene ID: HRGMv2_3870_10_24
Type: CAZyme
Location: 41278 - 42666 (-)
Type: CAZyme
Location: 41278 - 42666 (-)
Gene ID: HRGMv2_3870_10_25
Type: CAZyme
Location: 42694 - 44025 (-)
Type: CAZyme
Location: 42694 - 44025 (-)
Gene ID: HRGMv2_3870_10_26
Type: pfam
Location: 44102 - 44311 (-)
Type: pfam
Location: 44102 - 44311 (-)
Gene ID: HRGMv2_3870_10_27
Type: CAZyme
Location: 44597 - 46204 (-)
Type: CAZyme
Location: 44597 - 46204 (-)
Gene ID: HRGMv2_3870_10_28
Type: CAZyme
Location: 46239 - 48689 (-)
Type: CAZyme
Location: 46239 - 48689 (-)
Gene ID: HRGMv2_3870_10_29
Type: CAZyme
Location: 48710 - 49579 (-)
Type: CAZyme
Location: 48710 - 49579 (-)
Gene ID: HRGMv2_3870_10_30
Type: CAZyme
Location: 49920 - 51632 (+)
Type: CAZyme
Location: 49920 - 51632 (+)
Gene ID: HRGMv2_3870_10_31
Type: CAZyme
Location: 51731 - 54232 (-)
Type: CAZyme
Location: 51731 - 54232 (-)
Gene ID: HRGMv2_3870_10_32
Type: pfam
Location: 54320 - 56119 (-)
Type: pfam
Location: 54320 - 56119 (-)
Gene ID: HRGMv2_3870_10_33
Type: TC
Location: 56165 - 59305 (-)
Type: TC
Location: 56165 - 59305 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3870_10_16 | vegetarian > omnivore | 1.70111 | 0.01057 |