dbCAN Logo

Cluster: HRGMv2_3870_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3870_7 HRGMv2_3870_7_54 72715 74148 - CE20
pfam HRGMv2_3870_7 HRGMv2_3870_7_55 74566 75339 + Shikimate_DH | ApbA | NAD_binding_2 | F420_oxidored | P5CR_dimer
NULL(UNKNOWN) HRGMv2_3870_7 HRGMv2_3870_7_56 75396 75623 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3870_7 HRGMv2_3870_7_57 75626 77134 - 2.A.66.1.45
CAZyme HRGMv2_3870_7 HRGMv2_3870_7_58 77153 79318 + GH89
NULL(UNKNOWN) HRGMv2_3870_7 HRGMv2_3870_7_59 79353 80420 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3870_7 HRGMv2_3870_7_60 80454 83468 + 1.B.14.6.1
pfam HRGMv2_3870_7 HRGMv2_3870_7_61 83493 85169 + SusD_RagB
CAZyme HRGMv2_3870_7 HRGMv2_3870_7_62 85414 87693 + GH92
CAZyme HRGMv2_3870_7 HRGMv2_3870_7_63 87718 89118 + GH28
TF HRGMv2_3870_7 HRGMv2_3870_7_64 89221 89850 - HTH_AraC
STP HRGMv2_3870_7 HRGMv2_3870_7_65 89853 93371 - HATPase_c | HisKA | Y_Y_Y
TC HRGMv2_3870_7 HRGMv2_3870_7_66 93382 94563 - 2.A.1.2.14
Gene ID: HRGMv2_3870_7_54
Type: CAZyme
Location: 72715 - 74148 (-)
Gene ID: HRGMv2_3870_7_55
Type: pfam
Location: 74566 - 75339 (+)
Gene ID: HRGMv2_3870_7_56
Type:
Location: 75396 - 75623 (+)
Gene ID: HRGMv2_3870_7_57
Type: TC
Location: 75626 - 77134 (-)
Gene ID: HRGMv2_3870_7_58
Type: CAZyme
Location: 77153 - 79318 (+)
Gene ID: HRGMv2_3870_7_59
Type:
Location: 79353 - 80420 (+)
Gene ID: HRGMv2_3870_7_60
Type: TC
Location: 80454 - 83468 (+)
Gene ID: HRGMv2_3870_7_61
Type: pfam
Location: 83493 - 85169 (+)
Gene ID: HRGMv2_3870_7_62
Type: CAZyme
Location: 85414 - 87693 (+)
Gene ID: HRGMv2_3870_7_63
Type: CAZyme
Location: 87718 - 89118 (+)
Gene ID: HRGMv2_3870_7_64
Type: TF
Location: 89221 - 89850 (-)
Gene ID: HRGMv2_3870_7_65
Type: STP
Location: 89853 - 93371 (-)
Gene ID: HRGMv2_3870_7_66
Type: TC
Location: 93382 - 94563 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3870_7_60 vegetarian > vegan 1.23023 0.04511

🧭 Explore Read Mapping of CGC

← Back to Cluster List