dbCAN Logo

Cluster: HRGMv2_3870_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3870_3 HRGMv2_3870_3_104 124058 125218 - 2.A.1.7.17
CAZyme HRGMv2_3870_3 HRGMv2_3870_3_105 125271 127463 - GH36
CAZyme HRGMv2_3870_3 HRGMv2_3870_3_106 127489 129366 - GH32
NULL(UNKNOWN) HRGMv2_3870_3 HRGMv2_3870_3_107 129509 131851 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3870_3 HRGMv2_3870_3_108 132052 133863 - GH32
CAZyme HRGMv2_3870_3 HRGMv2_3870_3_109 133884 135458 - GH32
pfam HRGMv2_3870_3 HRGMv2_3870_3_110 135529 136929 - DUF4960
pfam HRGMv2_3870_3 HRGMv2_3870_3_111 136960 138693 - SusD_RagB | SusD-like_3
TC HRGMv2_3870_3 HRGMv2_3870_3_112 138720 141827 - 1.B.14.6.1
Gene ID: HRGMv2_3870_3_104
Type: TC
Location: 124058 - 125218 (-)
Gene ID: HRGMv2_3870_3_105
Type: CAZyme
Location: 125271 - 127463 (-)
Gene ID: HRGMv2_3870_3_106
Type: CAZyme
Location: 127489 - 129366 (-)
Gene ID: HRGMv2_3870_3_107
Type:
Location: 129509 - 131851 (-)
Gene ID: HRGMv2_3870_3_108
Type: CAZyme
Location: 132052 - 133863 (-)
Gene ID: HRGMv2_3870_3_109
Type: CAZyme
Location: 133884 - 135458 (-)
Gene ID: HRGMv2_3870_3_110
Type: pfam
Location: 135529 - 136929 (-)
Gene ID: HRGMv2_3870_3_111
Type: pfam
Location: 136960 - 138693 (-)
Gene ID: HRGMv2_3870_3_112
Type: TC
Location: 138720 - 141827 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List