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Cluster: HRGMv2_3870_CGC55

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3870_37 HRGMv2_3870_37_1 105 2597 - 9.B.144.1.4
pfam HRGMv2_3870_37 HRGMv2_3870_37_2 2688 3383 + PNP_UDP_1
pfam HRGMv2_3870_37 HRGMv2_3870_37_3 3390 3875 + LuxS
CAZyme HRGMv2_3870_37 HRGMv2_3870_37_4 4068 6482 - GH2
TC HRGMv2_3870_37 HRGMv2_3870_37_5 6695 9694 - 2.A.6.4.3
peptidase HRGMv2_3870_37 HRGMv2_3870_37_6 9900 11993 - M03.UPA
pfam HRGMv2_3870_37 HRGMv2_3870_37_7 12012 13070 - Exo_endo_phos
TC HRGMv2_3870_37 HRGMv2_3870_37_8 13067 13960 - 9.B.104.1.2
TC HRGMv2_3870_37 HRGMv2_3870_37_9 13935 14609 - 9.B.104.1.5
Gene ID: HRGMv2_3870_37_1
Type: TC
Location: 105 - 2597 (-)
Gene ID: HRGMv2_3870_37_2
Type: pfam
Location: 2688 - 3383 (+)
Gene ID: HRGMv2_3870_37_3
Type: pfam
Location: 3390 - 3875 (+)
Gene ID: HRGMv2_3870_37_4
Type: CAZyme
Location: 4068 - 6482 (-)
Gene ID: HRGMv2_3870_37_5
Type: TC
Location: 6695 - 9694 (-)
Gene ID: HRGMv2_3870_37_6
Type: peptidase
Location: 9900 - 11993 (-)
Gene ID: HRGMv2_3870_37_7
Type: pfam
Location: 12012 - 13070 (-)
Gene ID: HRGMv2_3870_37_8
Type: TC
Location: 13067 - 13960 (-)
Gene ID: HRGMv2_3870_37_9
Type: TC
Location: 13935 - 14609 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3870_37_8 vegetarian > vegan 1.36117 0.04511

🧭 Explore Read Mapping of CGC

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