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Cluster: HRGMv2_3870_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3870_5 HRGMv2_3870_5_26 31127 31744 - 3.A.8.1.1
TC HRGMv2_3870_5 HRGMv2_3870_5_27 32022 36362 + 2.A.6.1.2
pfam HRGMv2_3870_5 HRGMv2_3870_5_28 36383 37300 + HlyD_3 | HlyD_D23
TC HRGMv2_3870_5 HRGMv2_3870_5_29 37310 38353 + 9.B.33.1.1
TF HRGMv2_3870_5 HRGMv2_3870_5_30 38355 39113 + LytTR
TC HRGMv2_3870_5 HRGMv2_3870_5_31 39210 40829 + 3.A.1.121.4
pfam HRGMv2_3870_5 HRGMv2_3870_5_32 40910 41392 - dCMP_cyt_deam_1 | dCMP_cyt_deam_2
CAZyme HRGMv2_3870_5 HRGMv2_3870_5_33 41535 42425 + GH73
Gene ID: HRGMv2_3870_5_26
Type: TC
Location: 31127 - 31744 (-)
Gene ID: HRGMv2_3870_5_27
Type: TC
Location: 32022 - 36362 (+)
Gene ID: HRGMv2_3870_5_28
Type: pfam
Location: 36383 - 37300 (+)
Gene ID: HRGMv2_3870_5_29
Type: TC
Location: 37310 - 38353 (+)
Gene ID: HRGMv2_3870_5_30
Type: TF
Location: 38355 - 39113 (+)
Gene ID: HRGMv2_3870_5_31
Type: TC
Location: 39210 - 40829 (+)
Gene ID: HRGMv2_3870_5_32
Type: pfam
Location: 40910 - 41392 (-)
Gene ID: HRGMv2_3870_5_33
Type: CAZyme
Location: 41535 - 42425 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3870_5_30 vegetarian > vegan 1.08078 0.04511
HRGMv2_3870_5_33 vegetarian > vegan 1.30217 0.02944

🧭 Explore Read Mapping of CGC

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