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Cluster: HRGMv2_3870_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3870_7 HRGMv2_3870_7_26 35621 36340 - 1.A.30.2.9
pfam HRGMv2_3870_7 HRGMv2_3870_7_27 36344 37057 - PdxJ
pfam HRGMv2_3870_7 HRGMv2_3870_7_28 37349 38224 + NAD_kinase | NAD_kinase_C
CAZyme HRGMv2_3870_7 HRGMv2_3870_7_29 38324 41410 - PL8_2
TC HRGMv2_3870_7 HRGMv2_3870_7_30 41450 43105 - 2.A.1.42.2
TF HRGMv2_3870_7 HRGMv2_3870_7_31 43127 43681 - HTH_3
NULL(UNKNOWN) HRGMv2_3870_7 HRGMv2_3870_7_32 43723 44166 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3870_7 HRGMv2_3870_7_33 44199 45335 + GH109
Gene ID: HRGMv2_3870_7_26
Type: TC
Location: 35621 - 36340 (-)
Gene ID: HRGMv2_3870_7_27
Type: pfam
Location: 36344 - 37057 (-)
Gene ID: HRGMv2_3870_7_28
Type: pfam
Location: 37349 - 38224 (+)
Gene ID: HRGMv2_3870_7_29
Type: CAZyme
Location: 38324 - 41410 (-)
Gene ID: HRGMv2_3870_7_30
Type: TC
Location: 41450 - 43105 (-)
Gene ID: HRGMv2_3870_7_31
Type: TF
Location: 43127 - 43681 (-)
Gene ID: HRGMv2_3870_7_32
Type:
Location: 43723 - 44166 (+)
Gene ID: HRGMv2_3870_7_33
Type: CAZyme
Location: 44199 - 45335 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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