Cluster: HRGMv2_3870_CGC61
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate: beta-mannan
- Genome ID: HRGMv2_3870
- CGC Family ID: CGCFAM_00082
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3870_53 | HRGMv2_3870_53_1 | 3 | 3230 | + | 1.B.14.6.2 |
| TC | HRGMv2_3870_53 | HRGMv2_3870_53_2 | 3252 | 5192 | + | 8.A.46.2.2 |
| NULL(UNKNOWN) | HRGMv2_3870_53 | HRGMv2_3870_53_3 | 5291 | 5959 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3870_53 | HRGMv2_3870_53_4 | 6173 | 7564 | + | GH29 |
| CAZyme | HRGMv2_3870_53 | HRGMv2_3870_53_5 | 7570 | 9927 | + | GH3 |
| CAZyme | HRGMv2_3870_53 | HRGMv2_3870_53_6 | 10050 | 11105 | - | GH92 |
Gene ID: HRGMv2_3870_53_1
Type: TC
Location: 3 - 3230 (+)
Type: TC
Location: 3 - 3230 (+)
Gene ID: HRGMv2_3870_53_2
Type: TC
Location: 3252 - 5192 (+)
Type: TC
Location: 3252 - 5192 (+)
Gene ID: HRGMv2_3870_53_3
Type:
Location: 5291 - 5959 (+)
Type:
Location: 5291 - 5959 (+)
Gene ID: HRGMv2_3870_53_4
Type: CAZyme
Location: 6173 - 7564 (+)
Type: CAZyme
Location: 6173 - 7564 (+)
Gene ID: HRGMv2_3870_53_5
Type: CAZyme
Location: 7570 - 9927 (+)
Type: CAZyme
Location: 7570 - 9927 (+)
Gene ID: HRGMv2_3870_53_6
Type: CAZyme
Location: 10050 - 11105 (-)
Type: CAZyme
Location: 10050 - 11105 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3870_53_2 | vegetarian > vegan | 1.96072 | 0.04511 |
| HRGMv2_3870_53_3 | vegetarian > vegan | 2.16568 | 0.04511 |
| HRGMv2_3870_53_4 | vegetarian > vegan | 1.70801 | 0.04511 |
| HRGMv2_3870_53_5 | vegetarian > vegan | 1.97539 | 0.04511 |