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Cluster: HRGMv2_3870_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3870_10 HRGMv2_3870_10_75 99548 101248 + GH13_38
TC HRGMv2_3870_10 HRGMv2_3870_10_76 101372 103030 + 4.C.1.1.4
NULL(UNKNOWN) HRGMv2_3870_10 HRGMv2_3870_10_77 103035 104282 + NULL(UNKNOWN)
[View Structural Homologs]
STP HRGMv2_3870_10 HRGMv2_3870_10_78 104315 104902 - cNMP_binding
TC HRGMv2_3870_10 HRGMv2_3870_10_79 104924 105811 - 2.A.115.1.2
STP HRGMv2_3870_10 HRGMv2_3870_10_80 105964 107193 + Aminotran_1_2
pfam HRGMv2_3870_10 HRGMv2_3870_10_81 107253 109442 + Gln-synt_C | GSIII_N | Gln-synt_C-ter
TC HRGMv2_3870_10 HRGMv2_3870_10_82 109602 111263 + 2.A.81.1.2
Gene ID: HRGMv2_3870_10_75
Type: CAZyme
Location: 99548 - 101248 (+)
Gene ID: HRGMv2_3870_10_76
Type: TC
Location: 101372 - 103030 (+)
Gene ID: HRGMv2_3870_10_77
Type:
Location: 103035 - 104282 (+)
Gene ID: HRGMv2_3870_10_78
Type: STP
Location: 104315 - 104902 (-)
Gene ID: HRGMv2_3870_10_79
Type: TC
Location: 104924 - 105811 (-)
Gene ID: HRGMv2_3870_10_80
Type: STP
Location: 105964 - 107193 (+)
Gene ID: HRGMv2_3870_10_81
Type: pfam
Location: 107253 - 109442 (+)
Gene ID: HRGMv2_3870_10_82
Type: TC
Location: 109602 - 111263 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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