Cluster: HRGMv2_3870_CGC54
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: HRGMv2_3870
- CGC Family ID: CGCFAM_00001
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3870_34 | HRGMv2_3870_34_14 | 17113 | 18807 | + | 2.A.58.2.2 |
| CAZyme | HRGMv2_3870_34 | HRGMv2_3870_34_15 | 18887 | 20665 | - | GH110 |
| pfam | HRGMv2_3870_34 | HRGMv2_3870_34_16 | 20789 | 22609 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_3870_34 | HRGMv2_3870_34_17 | 22625 | 25795 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_3870_34_14
Type: TC
Location: 17113 - 18807 (+)
Type: TC
Location: 17113 - 18807 (+)
Gene ID: HRGMv2_3870_34_15
Type: CAZyme
Location: 18887 - 20665 (-)
Type: CAZyme
Location: 18887 - 20665 (-)
Gene ID: HRGMv2_3870_34_16
Type: pfam
Location: 20789 - 22609 (-)
Type: pfam
Location: 20789 - 22609 (-)
Gene ID: HRGMv2_3870_34_17
Type: TC
Location: 22625 - 25795 (-)
Type: TC
Location: 22625 - 25795 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.