Genome Details
Selected Rep_genome_ID: HRGMv2_3101
Total Genomes Found: 2
Total Genomes Found: 2
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger avicola
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| HRGMv2_3101 | 2,500,538 | 96.71% | 0% | Japan | Asia | HRGM |
| MGYG000000920 | 2,473,301 | 94.56% | 2.04% | China | Asia | UHGG |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_3101_CGC16 | CGCFAM_00007 | Yes | 9 | 4 | |
| HRGMv2_3101_CGC26 | CGCFAM_00098 | Yes | 9 | 4 | |
| HRGMv2_3101_CGC15 | CGCFAM_00246 | Yes | 9 | 4 | |
| HRGMv2_3101_CGC19 | CGCFAM_00462 | Yes | 14 | 6 | |
| HRGMv2_3101_CGC20 | CGCFAM_00488 | Yes | 5 | 2 | |
| HRGMv2_3101_CGC5 | CGCFAM_00662 | Yes | 3 | 2 | |
| HRGMv2_3101_CGC18 | CGCFAM_00764 | Yes | 7 | 1 | |
| HRGMv2_3101_CGC14 | CGCFAM_00782 | Yes | 5 | 2 | |
| HRGMv2_3101_CGC10 | CGCFAM_01151 | Yes | 6 | 2 | |
| HRGMv2_3101_CGC6 | CGCFAM_01316 | Yes | 5 | 3 | |
| HRGMv2_3101_CGC27 | CGCFAM_03268 | Yes | 5 | 3 | |
| HRGMv2_3101_CGC3 | CGCFAM_05711 | Yes | 6 | 3 | |
| HRGMv2_3101_CGC17 | CGCFAM_10298 | Yes | 5 | 1 | |
| HRGMv2_3101_CGC24 | CGCFAM_10299 | Yes | 13 | 2 | |
| HRGMv2_3101_CGC25 | CGCFAM_10300 | Yes | 10 | 2 |
Top CAZyme Families