Cluster: HRGMv2_3101_CGC14
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3101
- CGC Family ID: CGCFAM_00782
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3101_58 | HRGMv2_3101_58_11 | 13197 | 14204 | + | 3.A.1.1.10 |
| TC | HRGMv2_3101_58 | HRGMv2_3101_58_12 | 14218 | 15153 | + | 3.A.1.1.29 |
| NULL(UNKNOWN) | HRGMv2_3101_58 | HRGMv2_3101_58_13 | 15232 | 16818 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3101_58 | HRGMv2_3101_58_14 | 17057 | 20212 | + | CE12 | PL11 |
| CAZyme | HRGMv2_3101_58 | HRGMv2_3101_58_15 | 20227 | 21417 | + | PL22 | PL22 |
Gene ID: HRGMv2_3101_58_11
Type: TC
Location: 13197 - 14204 (+)
Type: TC
Location: 13197 - 14204 (+)
Gene ID: HRGMv2_3101_58_12
Type: TC
Location: 14218 - 15153 (+)
Type: TC
Location: 14218 - 15153 (+)
Gene ID: HRGMv2_3101_58_13
Type:
Location: 15232 - 16818 (+)
Type:
Location: 15232 - 16818 (+)
Gene ID: HRGMv2_3101_58_14
Type: CAZyme
Location: 17057 - 20212 (+)
Type: CAZyme
Location: 17057 - 20212 (+)
Gene ID: HRGMv2_3101_58_15
Type: CAZyme
Location: 20227 - 21417 (+)
Type: CAZyme
Location: 20227 - 21417 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger avicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3101_58_12 | vegetarian > omnivore | 1.09430 | 0.01287 |
| HRGMv2_3101_58_14 | vegetarian > omnivore | 1.13387 | 0.01287 |
| HRGMv2_3101_58_15 | vegetarian > omnivore | 1.01186 | 0.01287 |