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Cluster: HRGMv2_3101_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3101_134 HRGMv2_3101_134_6 6960 7883 + 3.A.1.131.1
pfam HRGMv2_3101_134 HRGMv2_3101_134_7 7876 8664 + ABC2_membrane_4
pfam HRGMv2_3101_134 HRGMv2_3101_134_8 8681 9487 + ABC2_membrane_2 | ABC2_membrane_4
CAZyme HRGMv2_3101_134 HRGMv2_3101_134_9 9712 11727 + GH120
TC HRGMv2_3101_134 HRGMv2_3101_134_10 11857 15558 - 3.A.1.122.13
STP HRGMv2_3101_134 HRGMv2_3101_134_11 15572 16237 - TetR_N
TC HRGMv2_3101_134 HRGMv2_3101_134_12 16418 17332 + 2.A.115.1.5
TC HRGMv2_3101_134 HRGMv2_3101_134_13 17713 19458 + 3.A.1.106.2
peptidase HRGMv2_3101_134 HRGMv2_3101_134_14 19559 20953 - M18.UPW
CAZyme HRGMv2_3101_134 HRGMv2_3101_134_15 21043 21663 - GH23
Gene ID: HRGMv2_3101_134_6
Type: TC
Location: 6960 - 7883 (+)
Gene ID: HRGMv2_3101_134_7
Type: pfam
Location: 7876 - 8664 (+)
Gene ID: HRGMv2_3101_134_8
Type: pfam
Location: 8681 - 9487 (+)
Gene ID: HRGMv2_3101_134_9
Type: CAZyme
Location: 9712 - 11727 (+)
Gene ID: HRGMv2_3101_134_10
Type: TC
Location: 11857 - 15558 (-)
Gene ID: HRGMv2_3101_134_11
Type: STP
Location: 15572 - 16237 (-)
Gene ID: HRGMv2_3101_134_12
Type: TC
Location: 16418 - 17332 (+)
Gene ID: HRGMv2_3101_134_13
Type: TC
Location: 17713 - 19458 (+)
Gene ID: HRGMv2_3101_134_14
Type: peptidase
Location: 19559 - 20953 (-)
Gene ID: HRGMv2_3101_134_15
Type: CAZyme
Location: 21043 - 21663 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Ruminococcaceae
→
Genus
Gemmiger
→
Species
Gemmiger avicola

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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