Cluster: HRGMv2_3101_CGC20
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3101
- CGC Family ID: CGCFAM_00488
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3101_116 | HRGMv2_3101_116_8 | 9290 | 11161 | - | GH20 |
| CAZyme | HRGMv2_3101_116 | HRGMv2_3101_116_9 | 11188 | 12945 | - | GH20 |
| pfam | HRGMv2_3101_116 | HRGMv2_3101_116_10 | 12978 | 13754 | - | Glucosamine_iso |
| TC | HRGMv2_3101_116 | HRGMv2_3101_116_11 | 13786 | 14661 | - | 3.A.1.1.29 |
| TC | HRGMv2_3101_116 | HRGMv2_3101_116_12 | 14681 | 15667 | - | 3.A.1.1.10 |
Gene ID: HRGMv2_3101_116_8
Type: CAZyme
Location: 9290 - 11161 (-)
Type: CAZyme
Location: 9290 - 11161 (-)
Gene ID: HRGMv2_3101_116_9
Type: CAZyme
Location: 11188 - 12945 (-)
Type: CAZyme
Location: 11188 - 12945 (-)
Gene ID: HRGMv2_3101_116_10
Type: pfam
Location: 12978 - 13754 (-)
Type: pfam
Location: 12978 - 13754 (-)
Gene ID: HRGMv2_3101_116_11
Type: TC
Location: 13786 - 14661 (-)
Type: TC
Location: 13786 - 14661 (-)
Gene ID: HRGMv2_3101_116_12
Type: TC
Location: 14681 - 15667 (-)
Type: TC
Location: 14681 - 15667 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger avicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.