Cluster: HRGMv2_3101_CGC6
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3101
- CGC Family ID: CGCFAM_01316
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3101_27 | HRGMv2_3101_27_18 | 23274 | 24332 | - | GT2 |
| pfam | HRGMv2_3101_27 | HRGMv2_3101_27_19 | 24427 | 26289 | - | Hydrolase |
| CAZyme | HRGMv2_3101_27 | HRGMv2_3101_27_20 | 26286 | 27215 | - | GT2 |
| CAZyme | HRGMv2_3101_27 | HRGMv2_3101_27_21 | 27222 | 27986 | - | GT111 |
| TC | HRGMv2_3101_27 | HRGMv2_3101_27_22 | 28141 | 30042 | - | 3.A.1.120.3 |
Gene ID: HRGMv2_3101_27_18
Type: CAZyme
Location: 23274 - 24332 (-)
Type: CAZyme
Location: 23274 - 24332 (-)
Gene ID: HRGMv2_3101_27_19
Type: pfam
Location: 24427 - 26289 (-)
Type: pfam
Location: 24427 - 26289 (-)
Gene ID: HRGMv2_3101_27_20
Type: CAZyme
Location: 26286 - 27215 (-)
Type: CAZyme
Location: 26286 - 27215 (-)
Gene ID: HRGMv2_3101_27_21
Type: CAZyme
Location: 27222 - 27986 (-)
Type: CAZyme
Location: 27222 - 27986 (-)
Gene ID: HRGMv2_3101_27_22
Type: TC
Location: 28141 - 30042 (-)
Type: TC
Location: 28141 - 30042 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger avicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.