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Cluster: HRGMv2_3101_CGC26

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3101_136 HRGMv2_3101_136_7 5114 7381 - GT35
CAZyme HRGMv2_3101_136 HRGMv2_3101_136_8 7408 9033 - GH13_31
CAZyme HRGMv2_3101_136 HRGMv2_3101_136_9 9049 11022 - GH133
CAZyme HRGMv2_3101_136 HRGMv2_3101_136_10 11060 13051 - GH13_14
TC HRGMv2_3101_136 HRGMv2_3101_136_11 13249 14112 - 3.A.1.1.27
TC HRGMv2_3101_136 HRGMv2_3101_136_12 14115 15506 - 3.A.1.1.27
STP HRGMv2_3101_136 HRGMv2_3101_136_13 15528 16538 - SBP_bac_1
TF HRGMv2_3101_136 HRGMv2_3101_136_14 17197 18189 + LacI
TC HRGMv2_3101_136 HRGMv2_3101_136_15 18263 19456 - 3.B.1.1.2
Gene ID: HRGMv2_3101_136_7
Type: CAZyme
Location: 5114 - 7381 (-)
Gene ID: HRGMv2_3101_136_8
Type: CAZyme
Location: 7408 - 9033 (-)
Gene ID: HRGMv2_3101_136_9
Type: CAZyme
Location: 9049 - 11022 (-)
Gene ID: HRGMv2_3101_136_10
Type: CAZyme
Location: 11060 - 13051 (-)
Gene ID: HRGMv2_3101_136_11
Type: TC
Location: 13249 - 14112 (-)
Gene ID: HRGMv2_3101_136_12
Type: TC
Location: 14115 - 15506 (-)
Gene ID: HRGMv2_3101_136_13
Type: STP
Location: 15528 - 16538 (-)
Gene ID: HRGMv2_3101_136_14
Type: TF
Location: 17197 - 18189 (+)
Gene ID: HRGMv2_3101_136_15
Type: TC
Location: 18263 - 19456 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Ruminococcaceae
→
Genus
Gemmiger
→
Species
Gemmiger avicola

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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