Cluster: HRGMv2_3101_CGC27
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3101
- CGC Family ID: CGCFAM_03268
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3101_155 | HRGMv2_3101_155_2 | 3079 | 4059 | + | 3.A.1.1.10 |
| TC | HRGMv2_3101_155 | HRGMv2_3101_155_3 | 4080 | 4991 | + | 3.A.1.1.29 |
| CAZyme | HRGMv2_3101_155 | HRGMv2_3101_155_4 | 5009 | 6157 | + | GH88 |
| CAZyme | HRGMv2_3101_155 | HRGMv2_3101_155_5 | 6182 | 8278 | + | GH36 |
| CAZyme | HRGMv2_3101_155 | HRGMv2_3101_155_6 | 8281 | 9672 | + | CBM91 | GH43_11 |
Gene ID: HRGMv2_3101_155_2
Type: TC
Location: 3079 - 4059 (+)
Type: TC
Location: 3079 - 4059 (+)
Gene ID: HRGMv2_3101_155_3
Type: TC
Location: 4080 - 4991 (+)
Type: TC
Location: 4080 - 4991 (+)
Gene ID: HRGMv2_3101_155_4
Type: CAZyme
Location: 5009 - 6157 (+)
Type: CAZyme
Location: 5009 - 6157 (+)
Gene ID: HRGMv2_3101_155_5
Type: CAZyme
Location: 6182 - 8278 (+)
Type: CAZyme
Location: 6182 - 8278 (+)
Gene ID: HRGMv2_3101_155_6
Type: CAZyme
Location: 8281 - 9672 (+)
Type: CAZyme
Location: 8281 - 9672 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger avicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.