Cluster: HRGMv2_3101_CGC18
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3101
- CGC Family ID: CGCFAM_00764
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3101_101 | HRGMv2_3101_101_18 | 18759 | 19334 | + | 4.F.1.1.7 |
| pfam | HRGMv2_3101_101 | HRGMv2_3101_101_19 | 19383 | 20777 | + | tRNA-synt_1e | DALR_2 | tRNA-synt_1g | tRNA-synt_1g | CysS_C |
| CAZyme | HRGMv2_3101_101 | HRGMv2_3101_101_20 | 20854 | 23862 | + | GT39 |
| pfam | HRGMv2_3101_101 | HRGMv2_3101_101_21 | 24012 | 25112 | + | DegT_DnrJ_EryC1 | Cys_Met_Meta_PP | Beta_elim_lyase |
| pfam | HRGMv2_3101_101 | HRGMv2_3101_101_22 | 25129 | 25551 | + | FdtA |
| TC | HRGMv2_3101_101 | HRGMv2_3101_101_23 | 25576 | 26373 | + | 3.A.1.103.4 |
| TC | HRGMv2_3101_101 | HRGMv2_3101_101_24 | 26386 | 27147 | + | 3.A.1.103.1 |
Gene ID: HRGMv2_3101_101_18
Type: TC
Location: 18759 - 19334 (+)
Type: TC
Location: 18759 - 19334 (+)
Gene ID: HRGMv2_3101_101_19
Type: pfam
Location: 19383 - 20777 (+)
Type: pfam
Location: 19383 - 20777 (+)
Gene ID: HRGMv2_3101_101_20
Type: CAZyme
Location: 20854 - 23862 (+)
Type: CAZyme
Location: 20854 - 23862 (+)
Gene ID: HRGMv2_3101_101_21
Type: pfam
Location: 24012 - 25112 (+)
Type: pfam
Location: 24012 - 25112 (+)
Gene ID: HRGMv2_3101_101_22
Type: pfam
Location: 25129 - 25551 (+)
Type: pfam
Location: 25129 - 25551 (+)
Gene ID: HRGMv2_3101_101_23
Type: TC
Location: 25576 - 26373 (+)
Type: TC
Location: 25576 - 26373 (+)
Gene ID: HRGMv2_3101_101_24
Type: TC
Location: 26386 - 27147 (+)
Type: TC
Location: 26386 - 27147 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger avicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.