Cluster: HRGMv2_3101_CGC10
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3101
- CGC Family ID: CGCFAM_01151
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3101_42 | HRGMv2_3101_42_31 | 30368 | 31114 | + | 3.A.1.147.6 |
| TC | HRGMv2_3101_42 | HRGMv2_3101_42_32 | 31074 | 32639 | + | 3.A.1.147.4 |
| TC | HRGMv2_3101_42 | HRGMv2_3101_42_33 | 33199 | 34104 | - | 8.A.21.2.2 |
| pfam | HRGMv2_3101_42 | HRGMv2_3101_42_34 | 34195 | 34644 | - | NfeD |
| CAZyme | HRGMv2_3101_42 | HRGMv2_3101_42_35 | 34833 | 36683 | - | GH13_39 |
| CAZyme | HRGMv2_3101_42 | HRGMv2_3101_42_36 | 36817 | 39222 | - | GT35 |
Gene ID: HRGMv2_3101_42_31
Type: TC
Location: 30368 - 31114 (+)
Type: TC
Location: 30368 - 31114 (+)
Gene ID: HRGMv2_3101_42_32
Type: TC
Location: 31074 - 32639 (+)
Type: TC
Location: 31074 - 32639 (+)
Gene ID: HRGMv2_3101_42_33
Type: TC
Location: 33199 - 34104 (-)
Type: TC
Location: 33199 - 34104 (-)
Gene ID: HRGMv2_3101_42_34
Type: pfam
Location: 34195 - 34644 (-)
Type: pfam
Location: 34195 - 34644 (-)
Gene ID: HRGMv2_3101_42_35
Type: CAZyme
Location: 34833 - 36683 (-)
Type: CAZyme
Location: 34833 - 36683 (-)
Gene ID: HRGMv2_3101_42_36
Type: CAZyme
Location: 36817 - 39222 (-)
Type: CAZyme
Location: 36817 - 39222 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger avicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.