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Cluster: HRGMv2_3101_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3101_66 HRGMv2_3101_66_2 1292 2752 - 2.A.50.2.1
TF HRGMv2_3101_66 HRGMv2_3101_66_3 3388 4614 + Trans_reg_C
CAZyme HRGMv2_3101_66 HRGMv2_3101_66_4 5066 6136 - GT4
NULL(UNKNOWN) HRGMv2_3101_66 HRGMv2_3101_66_5 6133 6609 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3101_66 HRGMv2_3101_66_6 7150 8181 + GT2
pfam HRGMv2_3101_66 HRGMv2_3101_66_7 8178 9362 + UDPG_MGDP_dh | NAD_Gly3P_dh_N | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
NULL(UNKNOWN) HRGMv2_3101_66 HRGMv2_3101_66_8 9438 11831 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3101_66 HRGMv2_3101_66_9 11850 13046 + GT4
CAZyme HRGMv2_3101_66 HRGMv2_3101_66_10 13043 14116 + GT2
Gene ID: HRGMv2_3101_66_2
Type: TC
Location: 1292 - 2752 (-)
Gene ID: HRGMv2_3101_66_3
Type: TF
Location: 3388 - 4614 (+)
Gene ID: HRGMv2_3101_66_4
Type: CAZyme
Location: 5066 - 6136 (-)
Gene ID: HRGMv2_3101_66_5
Type:
Location: 6133 - 6609 (-)
Gene ID: HRGMv2_3101_66_6
Type: CAZyme
Location: 7150 - 8181 (+)
Gene ID: HRGMv2_3101_66_7
Type: pfam
Location: 8178 - 9362 (+)
Gene ID: HRGMv2_3101_66_8
Type:
Location: 9438 - 11831 (+)
Gene ID: HRGMv2_3101_66_9
Type: CAZyme
Location: 11850 - 13046 (+)
Gene ID: HRGMv2_3101_66_10
Type: CAZyme
Location: 13043 - 14116 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Ruminococcaceae
→
Genus
Gemmiger
→
Species
Gemmiger avicola

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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