Cluster: HRGMv2_3101_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3101
- CGC Family ID: CGCFAM_05711
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3101_8 | HRGMv2_3101_8_7 | 5252 | 6610 | - | 2.A.66.1.33 |
| CAZyme | HRGMv2_3101_8 | HRGMv2_3101_8_8 | 6704 | 8215 | - | GH79 |
| CAZyme | HRGMv2_3101_8 | HRGMv2_3101_8_9 | 8349 | 9857 | - | GH79 |
| STP | HRGMv2_3101_8 | HRGMv2_3101_8_10 | 10058 | 10651 | - | TetR_N |
| TC | HRGMv2_3101_8 | HRGMv2_3101_8_11 | 11001 | 12419 | + | 2.A.2.3.3 |
| CAZyme | HRGMv2_3101_8 | HRGMv2_3101_8_12 | 12554 | 14491 | + | GH13_14 |
Gene ID: HRGMv2_3101_8_7
Type: TC
Location: 5252 - 6610 (-)
Type: TC
Location: 5252 - 6610 (-)
Gene ID: HRGMv2_3101_8_8
Type: CAZyme
Location: 6704 - 8215 (-)
Type: CAZyme
Location: 6704 - 8215 (-)
Gene ID: HRGMv2_3101_8_9
Type: CAZyme
Location: 8349 - 9857 (-)
Type: CAZyme
Location: 8349 - 9857 (-)
Gene ID: HRGMv2_3101_8_10
Type: STP
Location: 10058 - 10651 (-)
Type: STP
Location: 10058 - 10651 (-)
Gene ID: HRGMv2_3101_8_11
Type: TC
Location: 11001 - 12419 (+)
Type: TC
Location: 11001 - 12419 (+)
Gene ID: HRGMv2_3101_8_12
Type: CAZyme
Location: 12554 - 14491 (+)
Type: CAZyme
Location: 12554 - 14491 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger avicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.