Cluster: HRGMv2_3101_CGC17
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3101
- CGC Family ID: CGCFAM_10298
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3101_91 | HRGMv2_3101_91_7 | 6433 | 7794 | + | 2.A.38.1.1 |
| TC | HRGMv2_3101_91 | HRGMv2_3101_91_8 | 7807 | 9294 | + | 2.A.38.1.1 |
| pfam | HRGMv2_3101_91 | HRGMv2_3101_91_9 | 9440 | 10723 | + | DegT_DnrJ_EryC1 | Cys_Met_Meta_PP |
| pfam | HRGMv2_3101_91 | HRGMv2_3101_91_10 | 10906 | 11835 | + | HTS |
| CAZyme | HRGMv2_3101_91 | HRGMv2_3101_91_11 | 11999 | 12811 | + | GT2 |
Gene ID: HRGMv2_3101_91_7
Type: TC
Location: 6433 - 7794 (+)
Type: TC
Location: 6433 - 7794 (+)
Gene ID: HRGMv2_3101_91_8
Type: TC
Location: 7807 - 9294 (+)
Type: TC
Location: 7807 - 9294 (+)
Gene ID: HRGMv2_3101_91_9
Type: pfam
Location: 9440 - 10723 (+)
Type: pfam
Location: 9440 - 10723 (+)
Gene ID: HRGMv2_3101_91_10
Type: pfam
Location: 10906 - 11835 (+)
Type: pfam
Location: 10906 - 11835 (+)
Gene ID: HRGMv2_3101_91_11
Type: CAZyme
Location: 11999 - 12811 (+)
Type: CAZyme
Location: 11999 - 12811 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger avicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.