Cluster: HRGMv2_3101_CGC24
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3101
- CGC Family ID: CGCFAM_10299
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3101_126 | HRGMv2_3101_126_1 | 1 | 717 | + | GH25 |
| pfam | HRGMv2_3101_126 | HRGMv2_3101_126_2 | 823 | 1545 | + | DNA_alkylation |
| TC | HRGMv2_3101_126 | HRGMv2_3101_126_3 | 1941 | 3434 | + | 4.A.1.1.7 |
| pfam | HRGMv2_3101_126 | HRGMv2_3101_126_4 | 3708 | 3962 | - | IreB |
| CAZyme | HRGMv2_3101_126 | HRGMv2_3101_126_5 | 4104 | 5228 | - | CE9 |
| sulfatase | HRGMv2_3101_126 | HRGMv2_3101_126_6 | 5242 | 5967 | - | S1_9 |
| TC | HRGMv2_3101_126 | HRGMv2_3101_126_7 | 6157 | 8112 | - | 3.A.1.5.41 |
| TC | HRGMv2_3101_126 | HRGMv2_3101_126_8 | 8371 | 9414 | - | 3.A.1.5.20 |
| TC | HRGMv2_3101_126 | HRGMv2_3101_126_9 | 9416 | 10429 | - | 3.A.1.5.2 |
| TC | HRGMv2_3101_126 | HRGMv2_3101_126_10 | 10443 | 11540 | - | 3.A.1.5.2 |
| TC | HRGMv2_3101_126 | HRGMv2_3101_126_11 | 11561 | 12472 | - | 3.A.1.5.2 |
| TC | HRGMv2_3101_126 | HRGMv2_3101_126_12 | 12827 | 14587 | - | 3.D.1.6.2 |
| TC | HRGMv2_3101_126 | HRGMv2_3101_126_13 | 14581 | 16416 | - | 3.D.1.5.1 |
Gene ID: HRGMv2_3101_126_1
Type: CAZyme
Location: 1 - 717 (+)
Type: CAZyme
Location: 1 - 717 (+)
Gene ID: HRGMv2_3101_126_2
Type: pfam
Location: 823 - 1545 (+)
Type: pfam
Location: 823 - 1545 (+)
Gene ID: HRGMv2_3101_126_3
Type: TC
Location: 1941 - 3434 (+)
Type: TC
Location: 1941 - 3434 (+)
Gene ID: HRGMv2_3101_126_4
Type: pfam
Location: 3708 - 3962 (-)
Type: pfam
Location: 3708 - 3962 (-)
Gene ID: HRGMv2_3101_126_5
Type: CAZyme
Location: 4104 - 5228 (-)
Type: CAZyme
Location: 4104 - 5228 (-)
Gene ID: HRGMv2_3101_126_6
Type: sulfatase
Location: 5242 - 5967 (-)
Type: sulfatase
Location: 5242 - 5967 (-)
Gene ID: HRGMv2_3101_126_7
Type: TC
Location: 6157 - 8112 (-)
Type: TC
Location: 6157 - 8112 (-)
Gene ID: HRGMv2_3101_126_8
Type: TC
Location: 8371 - 9414 (-)
Type: TC
Location: 8371 - 9414 (-)
Gene ID: HRGMv2_3101_126_9
Type: TC
Location: 9416 - 10429 (-)
Type: TC
Location: 9416 - 10429 (-)
Gene ID: HRGMv2_3101_126_10
Type: TC
Location: 10443 - 11540 (-)
Type: TC
Location: 10443 - 11540 (-)
Gene ID: HRGMv2_3101_126_11
Type: TC
Location: 11561 - 12472 (-)
Type: TC
Location: 11561 - 12472 (-)
Gene ID: HRGMv2_3101_126_12
Type: TC
Location: 12827 - 14587 (-)
Type: TC
Location: 12827 - 14587 (-)
Gene ID: HRGMv2_3101_126_13
Type: TC
Location: 14581 - 16416 (-)
Type: TC
Location: 14581 - 16416 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger avicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.