Genome Details
Selected Rep_genome_ID: HRGMv2_2377
Total Genomes Found: 4
Total Genomes Found: 4
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp900547255
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| HRGMv2_2377 | 2,681,871 | 98.65% | 0% | Tanzania | Africa | HRGM |
| KY043_bin.86_sub | 2,303,422 | 90.6% | 0% | NA | Africa | H3AfricaPhase2 |
| MGYG000000638 | 2,352,186 | 95.64% | 0.67% | Madagascar | Africa | UHGG |
| REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-E-H_G_7_1734.88 | 2,453,558 | 96.64% | 0% | NA | Africa | Hadza |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_2377_CGC18 | CGCFAM_00047 | Yes | 9 | 2 | |
| HRGMv2_2377_CGC9 | CGCFAM_00091 | Yes | 9 | 4 | |
| HRGMv2_2377_CGC19 | CGCFAM_00208 | Yes | 11 | 3 | |
| HRGMv2_2377_CGC11 | CGCFAM_00622 | Yes | 9 | 1 | |
| HRGMv2_2377_CGC13 | CGCFAM_00905 | Yes | 12 | 4 | |
| HRGMv2_2377_CGC17 | CGCFAM_01526 | Yes | 4 | 2 | |
| HRGMv2_2377_CGC25 | CGCFAM_01575 | Yes | 5 | 1 | |
| HRGMv2_2377_CGC24 | CGCFAM_02110 | Yes | 12 | 3 | |
| HRGMv2_2377_CGC30 | CGCFAM_04033 | Yes | 6 | 1 | |
| HRGMv2_2377_CGC29 | CGCFAM_05330 | Yes | 4 | 1 | |
| HRGMv2_2377_CGC31 | CGCFAM_05858 | Yes | 5 | 2 | |
| HRGMv2_2377_CGC16 | CGCFAM_07129 | Yes | 10 | 2 | |
| HRGMv2_2377_CGC14 | CGCFAM_10057 | Yes | 13 | 2 | |
| HRGMv2_2377_CGC21 | CGCFAM_10058 | Yes | 5 | 1 | |
| HRGMv2_2377_CGC26 | CGCFAM_10059 | Yes | 16 | 1 | |
| HRGMv2_2377_CGC5 | CGCFAM_10060 | Yes | 11 | 1 | |
| HRGMv2_2377_CGC7 | CGCFAM_10061 | Yes | 9 | 4 |
Top CAZyme Families