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Cluster: HRGMv2_2377_CGC26

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2377_24 HRGMv2_2377_24_9 7389 8273 - 3.A.1.132.6
TF HRGMv2_2377_24 HRGMv2_2377_24_10 8275 8640 - GntR
TC HRGMv2_2377_24 HRGMv2_2377_24_11 8775 10184 - 2.A.25.1.9
TC HRGMv2_2377_24 HRGMv2_2377_24_12 10284 12173 - 3.A.1.135.5
TC HRGMv2_2377_24 HRGMv2_2377_24_13 12189 13934 - 3.A.1.135.5
TF HRGMv2_2377_24 HRGMv2_2377_24_14 13983 14408 - MarR
TC HRGMv2_2377_24 HRGMv2_2377_24_15 14650 16827 + 3.A.10.1.4
pfam HRGMv2_2377_24 HRGMv2_2377_24_16 16948 18369 - PBP-Tp47_c | PBP-Tp47_a
pfam HRGMv2_2377_24 HRGMv2_2377_24_17 18394 19473 - FMN_bind
TC HRGMv2_2377_24 HRGMv2_2377_24_18 19838 20977 - 2.A.86.1.5
STP HRGMv2_2377_24 HRGMv2_2377_24_19 21486 22670 - Aminotran_1_2
CAZyme HRGMv2_2377_24 HRGMv2_2377_24_20 22726 24057 - GH28
TC HRGMv2_2377_24 HRGMv2_2377_24_21 24139 25068 - 2.A.69.4.3
TF HRGMv2_2377_24 HRGMv2_2377_24_22 25271 25948 + GntR
TC HRGMv2_2377_24 HRGMv2_2377_24_23 26046 27368 + 2.A.22.5.2
TC HRGMv2_2377_24 HRGMv2_2377_24_24 27455 29554 + 1.B.52.2.1
Gene ID: HRGMv2_2377_24_9
Type: TC
Location: 7389 - 8273 (-)
Gene ID: HRGMv2_2377_24_10
Type: TF
Location: 8275 - 8640 (-)
Gene ID: HRGMv2_2377_24_11
Type: TC
Location: 8775 - 10184 (-)
Gene ID: HRGMv2_2377_24_12
Type: TC
Location: 10284 - 12173 (-)
Gene ID: HRGMv2_2377_24_13
Type: TC
Location: 12189 - 13934 (-)
Gene ID: HRGMv2_2377_24_14
Type: TF
Location: 13983 - 14408 (-)
Gene ID: HRGMv2_2377_24_15
Type: TC
Location: 14650 - 16827 (+)
Gene ID: HRGMv2_2377_24_16
Type: pfam
Location: 16948 - 18369 (-)
Gene ID: HRGMv2_2377_24_17
Type: pfam
Location: 18394 - 19473 (-)
Gene ID: HRGMv2_2377_24_18
Type: TC
Location: 19838 - 20977 (-)
Gene ID: HRGMv2_2377_24_19
Type: STP
Location: 21486 - 22670 (-)
Gene ID: HRGMv2_2377_24_20
Type: CAZyme
Location: 22726 - 24057 (-)
Gene ID: HRGMv2_2377_24_21
Type: TC
Location: 24139 - 25068 (-)
Gene ID: HRGMv2_2377_24_22
Type: TF
Location: 25271 - 25948 (+)
Gene ID: HRGMv2_2377_24_23
Type: TC
Location: 26046 - 27368 (+)
Gene ID: HRGMv2_2377_24_24
Type: TC
Location: 27455 - 29554 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2377_24_13 vegan > omnivore 1.16775 0.01867

🧭 Explore Read Mapping of CGC

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