Cluster: HRGMv2_2377_CGC17
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2377
- CGC Family ID: CGCFAM_01526
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2377_16 | HRGMv2_2377_16_59 | 61728 | 62273 | - | 4.F.1.1.7 |
| pfam | HRGMv2_2377_16 | HRGMv2_2377_16_60 | 62304 | 63629 | - | UPF0004 | Radical_SAM | TRAM_2 |
| CAZyme | HRGMv2_2377_16 | HRGMv2_2377_16_61 | 63664 | 66042 | - | GH25 |
| CAZyme | HRGMv2_2377_16 | HRGMv2_2377_16_62 | 66039 | 67760 | - | GH25 |
Gene ID: HRGMv2_2377_16_59
Type: TC
Location: 61728 - 62273 (-)
Type: TC
Location: 61728 - 62273 (-)
Gene ID: HRGMv2_2377_16_60
Type: pfam
Location: 62304 - 63629 (-)
Type: pfam
Location: 62304 - 63629 (-)
Gene ID: HRGMv2_2377_16_61
Type: CAZyme
Location: 63664 - 66042 (-)
Type: CAZyme
Location: 63664 - 66042 (-)
Gene ID: HRGMv2_2377_16_62
Type: CAZyme
Location: 66039 - 67760 (-)
Type: CAZyme
Location: 66039 - 67760 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp900547255
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.