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Cluster: HRGMv2_2377_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2377_6 HRGMv2_2377_6_30 32307 32993 + 9.B.18.1.3
CAZyme HRGMv2_2377_6 HRGMv2_2377_6_31 33030 34103 + GT2
TC HRGMv2_2377_6 HRGMv2_2377_6_32 34081 35943 + 9.B.18.2.1
pfam HRGMv2_2377_6 HRGMv2_2377_6_33 35958 37046 + Glycos_transf_1 | Glyco_trans_1_4
CAZyme HRGMv2_2377_6 HRGMv2_2377_6_34 37043 38131 + GT4
CAZyme HRGMv2_2377_6 HRGMv2_2377_6_35 38134 39396 + GT4
TC HRGMv2_2377_6 HRGMv2_2377_6_36 39420 40196 + 3.A.1.103.4
TC HRGMv2_2377_6 HRGMv2_2377_6_37 40223 41467 + 3.A.1.103.4
CAZyme HRGMv2_2377_6 HRGMv2_2377_6_38 41491 42519 + GT4
Gene ID: HRGMv2_2377_6_30
Type: TC
Location: 32307 - 32993 (+)
Gene ID: HRGMv2_2377_6_31
Type: CAZyme
Location: 33030 - 34103 (+)
Gene ID: HRGMv2_2377_6_32
Type: TC
Location: 34081 - 35943 (+)
Gene ID: HRGMv2_2377_6_33
Type: pfam
Location: 35958 - 37046 (+)
Gene ID: HRGMv2_2377_6_34
Type: CAZyme
Location: 37043 - 38131 (+)
Gene ID: HRGMv2_2377_6_35
Type: CAZyme
Location: 38134 - 39396 (+)
Gene ID: HRGMv2_2377_6_36
Type: TC
Location: 39420 - 40196 (+)
Gene ID: HRGMv2_2377_6_37
Type: TC
Location: 40223 - 41467 (+)
Gene ID: HRGMv2_2377_6_38
Type: CAZyme
Location: 41491 - 42519 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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