Cluster: HRGMv2_2377_CGC25
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2377
- CGC Family ID: CGCFAM_01575
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2377_23 | HRGMv2_2377_23_22 | 25371 | 26528 | + | 9.B.10.1.1 |
| pfam | HRGMv2_2377_23 | HRGMv2_2377_23_23 | 26554 | 27504 | + | cobW | DUF1980_C |
| STP | HRGMv2_2377_23 | HRGMv2_2377_23_24 | 27577 | 28545 | + | NUDIX |
| CAZyme | HRGMv2_2377_23 | HRGMv2_2377_23_25 | 28683 | 29702 | - | GH25 |
| TC | HRGMv2_2377_23 | HRGMv2_2377_23_26 | 29864 | 30685 | + | 1.A.8.13.3 |
Gene ID: HRGMv2_2377_23_22
Type: TC
Location: 25371 - 26528 (+)
Type: TC
Location: 25371 - 26528 (+)
Gene ID: HRGMv2_2377_23_23
Type: pfam
Location: 26554 - 27504 (+)
Type: pfam
Location: 26554 - 27504 (+)
Gene ID: HRGMv2_2377_23_24
Type: STP
Location: 27577 - 28545 (+)
Type: STP
Location: 27577 - 28545 (+)
Gene ID: HRGMv2_2377_23_25
Type: CAZyme
Location: 28683 - 29702 (-)
Type: CAZyme
Location: 28683 - 29702 (-)
Gene ID: HRGMv2_2377_23_26
Type: TC
Location: 29864 - 30685 (+)
Type: TC
Location: 29864 - 30685 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp900547255
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.