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Cluster: HRGMv2_2377_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2377_13 HRGMv2_2377_13_1 416 2338 - CBM48 | GH13_9
pfam HRGMv2_2377_13 HRGMv2_2377_13_2 2557 3522 + Glycos_transf_4
pfam HRGMv2_2377_13 HRGMv2_2377_13_3 3931 4890 - RNase_T
TC HRGMv2_2377_13 HRGMv2_2377_13_4 5209 6894 + 1.B.52.2.1
NULL(UNKNOWN) HRGMv2_2377_13 HRGMv2_2377_13_5 6977 7363 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2377_13 HRGMv2_2377_13_6 7485 8954 - 4.A.1.1.7
TC HRGMv2_2377_13 HRGMv2_2377_13_7 9026 9505 - 4.A.1.2.11
CAZyme HRGMv2_2377_13 HRGMv2_2377_13_8 9499 10629 - CE9
sulfatase HRGMv2_2377_13 HRGMv2_2377_13_9 10665 11390 - S1_9
TC HRGMv2_2377_13 HRGMv2_2377_13_10 11397 13016 - 8.A.7.1.1
Gene ID: HRGMv2_2377_13_1
Type: CAZyme
Location: 416 - 2338 (-)
Gene ID: HRGMv2_2377_13_2
Type: pfam
Location: 2557 - 3522 (+)
Gene ID: HRGMv2_2377_13_3
Type: pfam
Location: 3931 - 4890 (-)
Gene ID: HRGMv2_2377_13_4
Type: TC
Location: 5209 - 6894 (+)
Gene ID: HRGMv2_2377_13_5
Type:
Location: 6977 - 7363 (+)
Gene ID: HRGMv2_2377_13_6
Type: TC
Location: 7485 - 8954 (-)
Gene ID: HRGMv2_2377_13_7
Type: TC
Location: 9026 - 9505 (-)
Gene ID: HRGMv2_2377_13_8
Type: CAZyme
Location: 9499 - 10629 (-)
Gene ID: HRGMv2_2377_13_9
Type: sulfatase
Location: 10665 - 11390 (-)
Gene ID: HRGMv2_2377_13_10
Type: TC
Location: 11397 - 13016 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2377_13_10 vegetarian > vegan 1.13298 0.02371

🧭 Explore Read Mapping of CGC

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