Genome Details
Selected Rep_genome_ID: HRGMv2_2182
Total Genomes Found: 7
Total Genomes Found: 7
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp000436535
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| B74.bin_2 | 3,192,925 | 98.62% | 0% | China(Inner Mongolia) | Asia | IMGG |
| CGMR022350 | 3,005,638 | 99.19% | 0% | China | Asia | CGMR |
| GH159_bin.56 | 3,043,556 | 97.29% | 0.04% | NA | Africa | H3AfricaPhase2 |
| HRGMv2_2182 | 3,435,133 | 99.32% | 0% | NA | NA | HRGM |
| MGYG000002552 | 3,071,336 | 99.33% | 0% | China | Asia | UHGG |
| Rep_2370 | 2,869,343 | 97.9866% | 0% | NA | NA | WIS |
| ShaoY_2019_ERR3406227_bin.5 | 3,163,509 | 99.32% | 0% | UK | Europe | ELGG |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_2182_CGC9 | CGCFAM_00003 | Yes | 12 | 5 | |
| HRGMv2_2182_CGC31 | CGCFAM_00005 | Yes | 4 | 2 | |
| HRGMv2_2182_CGC29 | CGCFAM_00015 | Yes | 9 | 2 | |
| HRGMv2_2182_CGC16 | CGCFAM_00036 | Yes | 10 | 5 | |
| HRGMv2_2182_CGC14 | CGCFAM_00159 | Yes | 5 | 2 | |
| HRGMv2_2182_CGC8 | CGCFAM_01037 | Yes | 4 | 1 | |
| HRGMv2_2182_CGC25 | CGCFAM_02110 | Yes | 9 | 1 | |
| HRGMv2_2182_CGC3 | CGCFAM_02258 | Yes | 7 | 1 | |
| HRGMv2_2182_CGC7 | CGCFAM_03970 | Yes | 3 | 1 | |
| HRGMv2_2182_CGC26 | CGCFAM_04934 | Yes | 5 | 3 | |
| HRGMv2_2182_CGC22 | CGCFAM_05929 | Yes | 7 | 1 | |
| HRGMv2_2182_CGC24 | CGCFAM_05930 | Yes | 7 | 2 | |
| HRGMv2_2182_CGC15 | CGCFAM_05931 | Yes | 5 | 1 | |
| HRGMv2_2182_CGC17 | CGCFAM_07477 | Yes | 9 | 1 | |
| HRGMv2_2182_CGC10 | CGCFAM_09979 | Yes | 5 | 1 |
Top CAZyme Families