Cluster: HRGMv2_2182_CGC10
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2182
- CGC Family ID: CGCFAM_09979
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2182_1 | HRGMv2_2182_1_807 | 950820 | 951875 | + | 2.A.27.1.3 |
| TC | HRGMv2_2182_1 | HRGMv2_2182_1_808 | 951820 | 951984 | + | 2.A.27.1.1 |
| NULL(UNKNOWN) | HRGMv2_2182_1 | HRGMv2_2182_1_809 | 952068 | 952391 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2182_1 | HRGMv2_2182_1_810 | 952791 | 954548 | + | tRNA-synt_2b | HGTP_anticodon | tRNA_SAD |
| CAZyme | HRGMv2_2182_1 | HRGMv2_2182_1_811 | 954977 | 958846 | + | PL1 | PL9_1 |
Gene ID: HRGMv2_2182_1_807
Type: TC
Location: 950820 - 951875 (+)
Type: TC
Location: 950820 - 951875 (+)
Gene ID: HRGMv2_2182_1_808
Type: TC
Location: 951820 - 951984 (+)
Type: TC
Location: 951820 - 951984 (+)
Gene ID: HRGMv2_2182_1_809
Type:
Location: 952068 - 952391 (+)
Type:
Location: 952068 - 952391 (+)
Gene ID: HRGMv2_2182_1_810
Type: pfam
Location: 952791 - 954548 (+)
Type: pfam
Location: 952791 - 954548 (+)
Gene ID: HRGMv2_2182_1_811
Type: CAZyme
Location: 954977 - 958846 (+)
Type: CAZyme
Location: 954977 - 958846 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp000436535
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2182_1_807 | vegan > omnivore | 1.59405 | 0.00565 |
| HRGMv2_2182_1_808 | vegan > omnivore | 1.62728 | 0.00565 |
| HRGMv2_2182_1_809 | vegan > omnivore | 2.24425 | 0.00565 |