dbCAN Logo

Cluster: HRGMv2_2182_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2182_1 HRGMv2_2182_1_496 543860 545662 - 9.B.34.1.2
pfam HRGMv2_2182_1 HRGMv2_2182_1_497 546232 546936 - tRNA_m1G_MT
pfam HRGMv2_2182_1 HRGMv2_2182_1_498 546936 547826 - Lipase_GDSL | Lipase_GDSL_2
CAZyme HRGMv2_2182_1 HRGMv2_2182_1_499 547856 549970 - GH13_39
NULL(UNKNOWN) HRGMv2_2182_1 HRGMv2_2182_1_500 550339 552204 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_2182_1 HRGMv2_2182_1_501 552379 554535 - Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4
TC HRGMv2_2182_1 HRGMv2_2182_1_502 554934 556781 - 3.A.16.1.1
Gene ID: HRGMv2_2182_1_496
Type: TC
Location: 543860 - 545662 (-)
Gene ID: HRGMv2_2182_1_497
Type: pfam
Location: 546232 - 546936 (-)
Gene ID: HRGMv2_2182_1_498
Type: pfam
Location: 546936 - 547826 (-)
Gene ID: HRGMv2_2182_1_499
Type: CAZyme
Location: 547856 - 549970 (-)
Gene ID: HRGMv2_2182_1_500
Type:
Location: 550339 - 552204 (-)
Gene ID: HRGMv2_2182_1_501
Type: pfam
Location: 552379 - 554535 (-)
Gene ID: HRGMv2_2182_1_502
Type: TC
Location: 554934 - 556781 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List