Cluster: HRGMv2_2182_CGC15
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2182
- CGC Family ID: CGCFAM_05931
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2182_1 | HRGMv2_2182_1_1111 | 1299834 | 1300844 | + | 2.A.56.1.5 |
| TC | HRGMv2_2182_1 | HRGMv2_2182_1_1112 | 1300863 | 1301336 | + | 2.A.56.1.5 |
| TC | HRGMv2_2182_1 | HRGMv2_2182_1_1113 | 1301346 | 1302650 | + | 2.A.56.1.5 |
| CAZyme | HRGMv2_2182_1 | HRGMv2_2182_1_1114 | 1303113 | 1311764 | + | CE8 | PL1 |
| TC | HRGMv2_2182_1 | HRGMv2_2182_1_1115 | 1312193 | 1313599 | + | 1.A.26.1.3 |
Gene ID: HRGMv2_2182_1_1111
Type: TC
Location: 1299834 - 1300844 (+)
Type: TC
Location: 1299834 - 1300844 (+)
Gene ID: HRGMv2_2182_1_1112
Type: TC
Location: 1300863 - 1301336 (+)
Type: TC
Location: 1300863 - 1301336 (+)
Gene ID: HRGMv2_2182_1_1113
Type: TC
Location: 1301346 - 1302650 (+)
Type: TC
Location: 1301346 - 1302650 (+)
Gene ID: HRGMv2_2182_1_1114
Type: CAZyme
Location: 1303113 - 1311764 (+)
Type: CAZyme
Location: 1303113 - 1311764 (+)
Gene ID: HRGMv2_2182_1_1115
Type: TC
Location: 1312193 - 1313599 (+)
Type: TC
Location: 1312193 - 1313599 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp000436535
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2182_1_1115 | vegetarian > vegan | 1.24522 | 0.00110 |