Cluster: HRGMv2_2182_CGC7
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2182
- CGC Family ID: CGCFAM_03970
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2182_1 | HRGMv2_2182_1_628 | 693074 | 698065 | - | PL9_1 |
| pfam | HRGMv2_2182_1 | HRGMv2_2182_1_629 | 698382 | 699356 | - | Transposase_31 |
| TC | HRGMv2_2182_1 | HRGMv2_2182_1_630 | 699723 | 701054 | - | 2.A.66.1.22 |
Gene ID: HRGMv2_2182_1_628
Type: CAZyme
Location: 693074 - 698065 (-)
Type: CAZyme
Location: 693074 - 698065 (-)
Gene ID: HRGMv2_2182_1_629
Type: pfam
Location: 698382 - 699356 (-)
Type: pfam
Location: 698382 - 699356 (-)
Gene ID: HRGMv2_2182_1_630
Type: TC
Location: 699723 - 701054 (-)
Type: TC
Location: 699723 - 701054 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp000436535
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2182_1_629 | vegan > omnivore | 8.54346 | 0.00565 |
| HRGMv2_2182_1_629 | vegetarian > omnivore | 6.95461 | 0.02312 |