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Cluster: HRGMv2_2182_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2182_1 HRGMv2_2182_1_2273 2675976 2676689 + 2.A.115.2.8
peptidase HRGMv2_2182_1 HRGMv2_2182_1_2274 2676809 2677600 - S09.UPW
CAZyme HRGMv2_2182_1 HRGMv2_2182_1_2275 2677591 2678343 - CE1
TF HRGMv2_2182_1 HRGMv2_2182_1_2276 2678472 2679155 - GntR
CAZyme HRGMv2_2182_1 HRGMv2_2182_1_2277 2679276 2680997 - GH143
TC HRGMv2_2182_1 HRGMv2_2182_1_2278 2681204 2682613 - 2.A.25.1.9
TC HRGMv2_2182_1 HRGMv2_2182_1_2279 2682901 2683290 - 2.A.66.1.33
Gene ID: HRGMv2_2182_1_2273
Type: TC
Location: 2675976 - 2676689 (+)
Gene ID: HRGMv2_2182_1_2274
Type: peptidase
Location: 2676809 - 2677600 (-)
Gene ID: HRGMv2_2182_1_2275
Type: CAZyme
Location: 2677591 - 2678343 (-)
Gene ID: HRGMv2_2182_1_2276
Type: TF
Location: 2678472 - 2679155 (-)
Gene ID: HRGMv2_2182_1_2277
Type: CAZyme
Location: 2679276 - 2680997 (-)
Gene ID: HRGMv2_2182_1_2278
Type: TC
Location: 2681204 - 2682613 (-)
Gene ID: HRGMv2_2182_1_2279
Type: TC
Location: 2682901 - 2683290 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2182_1_2273 vegan > omnivore 17.23641 0.00565
HRGMv2_2182_1_2273 vegetarian > omnivore 15.36103 0.02312
HRGMv2_2182_1_2274 vegan > omnivore 1.08200 0.00565

🧭 Explore Read Mapping of CGC

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