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Cluster: HRGMv2_2182_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2182_2 HRGMv2_2182_2_130 131162 132091 + 2.A.19.5.2
TF HRGMv2_2182_2 HRGMv2_2182_2_131 132194 133072 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_2182_2 HRGMv2_2182_2_132 133315 135660 + GT35
TF HRGMv2_2182_2 HRGMv2_2182_2_133 135764 137308 + HTH_AraC
TC HRGMv2_2182_2 HRGMv2_2182_2_134 137343 139136 + 9.B.33.1.1
pfam HRGMv2_2182_2 HRGMv2_2182_2_135 139316 140584 + SBP_bac_8
TC HRGMv2_2182_2 HRGMv2_2182_2_136 140674 142011 + 3.A.1.1.27
TC HRGMv2_2182_2 HRGMv2_2182_2_137 142008 142856 + 3.A.1.1.27
TC HRGMv2_2182_2 HRGMv2_2182_2_138 142921 144681 + 3.A.1.1.9
Gene ID: HRGMv2_2182_2_130
Type: TC
Location: 131162 - 132091 (+)
Gene ID: HRGMv2_2182_2_131
Type: TF
Location: 132194 - 133072 (-)
Gene ID: HRGMv2_2182_2_132
Type: CAZyme
Location: 133315 - 135660 (+)
Gene ID: HRGMv2_2182_2_133
Type: TF
Location: 135764 - 137308 (+)
Gene ID: HRGMv2_2182_2_134
Type: TC
Location: 137343 - 139136 (+)
Gene ID: HRGMv2_2182_2_135
Type: pfam
Location: 139316 - 140584 (+)
Gene ID: HRGMv2_2182_2_136
Type: TC
Location: 140674 - 142011 (+)
Gene ID: HRGMv2_2182_2_137
Type: TC
Location: 142008 - 142856 (+)
Gene ID: HRGMv2_2182_2_138
Type: TC
Location: 142921 - 144681 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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