Cluster: HRGMv2_2182_CGC14
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2182
- CGC Family ID: CGCFAM_00159
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2182_1 | HRGMv2_2182_1_1095 | 1283335 | 1284729 | + | 2.A.2.3.1 |
| CAZyme | HRGMv2_2182_1 | HRGMv2_2182_1_1096 | 1284822 | 1286654 | + | GH2 |
| pfam | HRGMv2_2182_1 | HRGMv2_2182_1_1097 | 1286985 | 1287848 | + | Aldose_epim |
| NULL(UNKNOWN) | HRGMv2_2182_1 | HRGMv2_2182_1_1098 | 1287962 | 1288192 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2182_1 | HRGMv2_2182_1_1099 | 1288287 | 1289249 | - | CE4 |
Gene ID: HRGMv2_2182_1_1095
Type: TC
Location: 1283335 - 1284729 (+)
Type: TC
Location: 1283335 - 1284729 (+)
Gene ID: HRGMv2_2182_1_1096
Type: CAZyme
Location: 1284822 - 1286654 (+)
Type: CAZyme
Location: 1284822 - 1286654 (+)
Gene ID: HRGMv2_2182_1_1097
Type: pfam
Location: 1286985 - 1287848 (+)
Type: pfam
Location: 1286985 - 1287848 (+)
Gene ID: HRGMv2_2182_1_1098
Type:
Location: 1287962 - 1288192 (+)
Type:
Location: 1287962 - 1288192 (+)
Gene ID: HRGMv2_2182_1_1099
Type: CAZyme
Location: 1288287 - 1289249 (-)
Type: CAZyme
Location: 1288287 - 1289249 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp000436535
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2182_1_1098 | vegan > omnivore | 1.01213 | 0.00565 |