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Cluster: HRGMv2_2182_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2182_1 HRGMv2_2182_1_1466 1760420 1762186 + 1.A.11.2.7
NULL(UNKNOWN) HRGMv2_2182_1 HRGMv2_2182_1_1467 1762583 1762789 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_2182_1 HRGMv2_2182_1_1468 1762786 1763163 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2182_1 HRGMv2_2182_1_1469 1763686 1765131 - CE4
pfam HRGMv2_2182_1 HRGMv2_2182_1_1470 1765527 1769087 + POR | POR_N | TPP_enzyme_C | EKR | Fer4_7 | PFOR_II
NULL(UNKNOWN) HRGMv2_2182_1 HRGMv2_2182_1_1471 1769508 1770212 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2182_1 HRGMv2_2182_1_1472 1770329 1771693 + 2.A.66.1.25
pfam HRGMv2_2182_1 HRGMv2_2182_1_1473 1771926 1772219 + FakA-like_M
TC HRGMv2_2182_1 HRGMv2_2182_1_1474 1772563 1773972 + 9.A.11.1.1
Gene ID: HRGMv2_2182_1_1466
Type: TC
Location: 1760420 - 1762186 (+)
Gene ID: HRGMv2_2182_1_1467
Type:
Location: 1762583 - 1762789 (+)
Gene ID: HRGMv2_2182_1_1468
Type:
Location: 1762786 - 1763163 (+)
Gene ID: HRGMv2_2182_1_1469
Type: CAZyme
Location: 1763686 - 1765131 (-)
Gene ID: HRGMv2_2182_1_1470
Type: pfam
Location: 1765527 - 1769087 (+)
Gene ID: HRGMv2_2182_1_1471
Type:
Location: 1769508 - 1770212 (+)
Gene ID: HRGMv2_2182_1_1472
Type: TC
Location: 1770329 - 1771693 (+)
Gene ID: HRGMv2_2182_1_1473
Type: pfam
Location: 1771926 - 1772219 (+)
Gene ID: HRGMv2_2182_1_1474
Type: TC
Location: 1772563 - 1773972 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2182_1_1474 vegetarian > vegan 1.16015 0.00110

🧭 Explore Read Mapping of CGC

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