Cluster: HRGMv2_2182_CGC26
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2182
- CGC Family ID: CGCFAM_04934
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2182_2 | HRGMv2_2182_2_248 | 260613 | 262403 | + | 9.B.34.1.3 |
| CAZyme | HRGMv2_2182_2 | HRGMv2_2182_2_249 | 262614 | 264233 | + | CBM91 | GH43_12 |
| CAZyme | HRGMv2_2182_2 | HRGMv2_2182_2_250 | 264401 | 267037 | + | GH95 |
| TC | HRGMv2_2182_2 | HRGMv2_2182_2_251 | 267294 | 268769 | - | 1.B.52.2.2 |
| CAZyme | HRGMv2_2182_2 | HRGMv2_2182_2_252 | 269203 | 270210 | + | CE12 |
Gene ID: HRGMv2_2182_2_248
Type: TC
Location: 260613 - 262403 (+)
Type: TC
Location: 260613 - 262403 (+)
Gene ID: HRGMv2_2182_2_249
Type: CAZyme
Location: 262614 - 264233 (+)
Type: CAZyme
Location: 262614 - 264233 (+)
Gene ID: HRGMv2_2182_2_250
Type: CAZyme
Location: 264401 - 267037 (+)
Type: CAZyme
Location: 264401 - 267037 (+)
Gene ID: HRGMv2_2182_2_251
Type: TC
Location: 267294 - 268769 (-)
Type: TC
Location: 267294 - 268769 (-)
Gene ID: HRGMv2_2182_2_252
Type: CAZyme
Location: 269203 - 270210 (+)
Type: CAZyme
Location: 269203 - 270210 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp000436535
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.