Genome Details
Selected Rep_genome_ID: HRGMv2_2122
Total Genomes Found: 12
Total Genomes Found: 12
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia_C
Species
Roseburia_C amylophila
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| A34.bin_11 | 2,918,213 | 99.52% | 0.74% | China(Inner Mongolia) | Asia | IMGG |
| CGMR070485 | 2,769,002 | 98.55% | 0.79% | China | Asia | CGMR |
| DM085_bin.14 | 2,767,801 | 99.03% | 0.59% | NA | Africa | H3AfricaPhase2 |
| GCA_021631125.1_ASM2163112v1_genomic | 2,735,834 | 99.52% | 2.43% | NA | Africa | H3AfricaPhase1 |
| GCA_021634065.1_ASM2163406v1_genomic | 2,567,593 | 99.52% | 1.47% | NA | Africa | H3AfricaPhase1 |
| HRGMv2_2122 | 2,605,932 | 98.38% | 0.333% | UK | Europe | HRGM |
| REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-E-H_B_8_2155.119 | 2,761,356 | 99.03% | 0.58% | NA | Africa | Hadza |
| Rep_2174 | 2,649,872 | 94.7907% | 0.644122% | NA | NA | WIS |
| SPMP49_bin.89 | 2,756,248 | 91.71% | 1.22% | Singapore | Asia | SPMP |
| SPMP52_bin.3 | 3,076,575 | 97.97% | 1.28% | Singapore | Asia | SPMP |
| SPMP76_bin.12 | 2,622,188 | 96.14% | 2.51% | Singapore | Asia | SPMP |
| SPMP96_bin.46 | 2,579,560 | 96.62% | 1.71% | Singapore | Asia | SPMP |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_2122_CGC13 | CGCFAM_00002 | Yes | 10 | 5 | |
| HRGMv2_2122_CGC10 | CGCFAM_00003 | Yes | 4 | 2 | |
| HRGMv2_2122_CGC14 | CGCFAM_00012 | Yes | 4 | 1 | host glycan/beta-glucan |
| HRGMv2_2122_CGC21 | CGCFAM_00046 | Yes | 5 | 1 | |
| HRGMv2_2122_CGC25 | CGCFAM_00047 | Yes | 5 | 1 | |
| HRGMv2_2122_CGC11 | CGCFAM_00064 | Yes | 10 | 3 | |
| HRGMv2_2122_CGC19 | CGCFAM_00099 | Yes | 3 | 1 | |
| HRGMv2_2122_CGC3 | CGCFAM_00106 | Yes | 7 | 3 | alpha-glucan |
| HRGMv2_2122_CGC16 | CGCFAM_00203 | Yes | 5 | 2 | |
| HRGMv2_2122_CGC8 | CGCFAM_00411 | Yes | 7 | 1 | |
| HRGMv2_2122_CGC27 | CGCFAM_00596 | Yes | 7 | 1 | |
| HRGMv2_2122_CGC17 | CGCFAM_00841 | Yes | 10 | 3 | |
| HRGMv2_2122_CGC1 | CGCFAM_01756 | Yes | 5 | 1 | |
| HRGMv2_2122_CGC29 | CGCFAM_05927 | Yes | 6 | 1 | |
| HRGMv2_2122_CGC5 | CGCFAM_09966 | Yes | 3 | 1 |
Top CAZyme Families