Cluster: HRGMv2_2122_CGC19
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2122
- CGC Family ID: CGCFAM_00099
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2122_9 | HRGMv2_2122_9_26 | 28125 | 30065 | + | 4.A.1.2.6 |
| CAZyme | HRGMv2_2122_9 | HRGMv2_2122_9_27 | 30239 | 31675 | + | GH1 |
| TC | HRGMv2_2122_9 | HRGMv2_2122_9_28 | 31695 | 33308 | + | 8.A.7.1.1 |
Gene ID: HRGMv2_2122_9_26
Type: TC
Location: 28125 - 30065 (+)
Type: TC
Location: 28125 - 30065 (+)
Gene ID: HRGMv2_2122_9_27
Type: CAZyme
Location: 30239 - 31675 (+)
Type: CAZyme
Location: 30239 - 31675 (+)
Gene ID: HRGMv2_2122_9_28
Type: TC
Location: 31695 - 33308 (+)
Type: TC
Location: 31695 - 33308 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia_C
Species
Roseburia_C amylophila
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.